Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3665

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3664 and Pf6N2E2_3665 are separated by 358 nucleotidesPf6N2E2_3665 and Pf6N2E2_3666 overlap by 1 nucleotidesPf6N2E2_3666 and Pf6N2E2_3667 overlap by 4 nucleotides Pf6N2E2_3664 - Carbamoyltransferase in large core OS assembly cluster, at 4,265,287 to 4,267,035 _3664 Pf6N2E2_3665 - serine/threonine protein kinase, at 4,267,394 to 4,268,848 _3665 Pf6N2E2_3666 - InaA protein, at 4,268,848 to 4,269,600 _3666 Pf6N2E2_3667 - Heptose kinase WapQ, eukaryotic type, at 4,269,597 to 4,270,331 _3667 Position (kb) 4267 4268 4269Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4266.720 kb on - strand, within Pf6N2E2_3664at 4266.785 kb on + strand, within Pf6N2E2_3664at 4266.786 kb on - strand, within Pf6N2E2_3664at 4266.929 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4266.975 kb on - strandat 4267.043 kb on + strandat 4267.044 kb on - strandat 4267.051 kb on + strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.052 kb on - strandat 4267.121 kb on - strandat 4267.121 kb on - strandat 4267.135 kb on + strandat 4267.135 kb on + strandat 4267.135 kb on + strandat 4267.141 kb on - strandat 4267.141 kb on - strandat 4267.153 kb on - strandat 4267.186 kb on + strandat 4267.186 kb on + strandat 4267.187 kb on - strandat 4267.193 kb on + strandat 4267.193 kb on + strandat 4267.242 kb on - strandat 4267.343 kb on + strandat 4267.344 kb on - strandat 4267.384 kb on - strandat 4267.395 kb on + strandat 4267.980 kb on - strand, within Pf6N2E2_3665at 4269.303 kb on - strand, within Pf6N2E2_3666at 4269.303 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.435 kb on - strand, within Pf6N2E2_3666at 4269.435 kb on - strand, within Pf6N2E2_3666at 4269.719 kb on - strand, within Pf6N2E2_3667at 4269.719 kb on - strand, within Pf6N2E2_3667

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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4,266,720 - Pf6N2E2_3664 0.82 +2.4
4,266,785 + Pf6N2E2_3664 0.86 +2.6
4,266,786 - Pf6N2E2_3664 0.86 +3.3
4,266,929 - +2.2
4,266,975 - +2.1
4,266,975 - +2.2
4,266,975 - +2.6
4,266,975 - +2.6
4,266,975 - +1.8
4,266,975 - +2.1
4,266,975 - +2.4
4,267,043 + +2.7
4,267,044 - -0.1
4,267,051 + +1.8
4,267,052 - +2.0
4,267,052 - +0.3
4,267,052 - +2.5
4,267,052 - +2.4
4,267,052 - +1.8
4,267,052 - +2.1
4,267,052 - +2.1
4,267,121 - -0.7
4,267,121 - -0.3
4,267,135 + +2.0
4,267,135 + +2.9
4,267,135 + +2.7
4,267,141 - +0.3
4,267,141 - +0.6
4,267,153 - +0.4
4,267,186 + -0.1
4,267,186 + -0.4
4,267,187 - +0.7
4,267,193 + -0.0
4,267,193 + +1.4
4,267,242 - +0.6
4,267,343 + -0.0
4,267,344 - +0.5
4,267,384 - +0.1
4,267,395 + +0.8
4,267,980 - Pf6N2E2_3665 0.40 -1.3
4,269,303 - Pf6N2E2_3666 0.60 -2.6
4,269,303 - Pf6N2E2_3666 0.60 -3.2
4,269,414 - Pf6N2E2_3666 0.75 -2.3
4,269,414 - Pf6N2E2_3666 0.75 -2.3
4,269,414 - Pf6N2E2_3666 0.75 -4.2
4,269,414 - Pf6N2E2_3666 0.75 -2.7
4,269,435 - Pf6N2E2_3666 0.78 -2.5
4,269,435 - Pf6N2E2_3666 0.78 -1.2
4,269,719 - Pf6N2E2_3667 0.17 -0.2
4,269,719 - Pf6N2E2_3667 0.17 -0.3

Or see this region's nucleotide sequence