Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3647 and Pf6N2E2_3648 are separated by 103 nucleotides Pf6N2E2_3648 and Pf6N2E2_3649 are separated by 11 nucleotides Pf6N2E2_3649 and Pf6N2E2_3650 are separated by 60 nucleotides
Pf6N2E2_3647 - LysR family transcriptional regulator PA4989, at 4,248,765 to 4,249,655
_3647
Pf6N2E2_3648 - Ethidium bromide-methyl viologen resistance protein EmrE, at 4,249,759 to 4,250,091
_3648
Pf6N2E2_3649 - hypothetical protein, at 4,250,103 to 4,250,252
_3649
Pf6N2E2_3650 - Oxidoreductase, FAD-binding, at 4,250,313 to 4,251,488
_3650
Position (kb)
4249
4250
4251 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4248.985 kb on + strand, within Pf6N2E2_3647 at 4248.985 kb on + strand, within Pf6N2E2_3647 at 4248.985 kb on + strand, within Pf6N2E2_3647 at 4248.985 kb on + strand, within Pf6N2E2_3647 at 4248.986 kb on - strand, within Pf6N2E2_3647 at 4248.986 kb on - strand, within Pf6N2E2_3647 at 4248.986 kb on - strand, within Pf6N2E2_3647 at 4248.986 kb on - strand, within Pf6N2E2_3647 at 4249.099 kb on + strand, within Pf6N2E2_3647 at 4249.099 kb on + strand, within Pf6N2E2_3647 at 4249.099 kb on + strand, within Pf6N2E2_3647 at 4249.099 kb on + strand, within Pf6N2E2_3647 at 4249.099 kb on + strand, within Pf6N2E2_3647 at 4249.099 kb on + strand, within Pf6N2E2_3647 at 4249.099 kb on + strand, within Pf6N2E2_3647 at 4249.099 kb on + strand, within Pf6N2E2_3647 at 4249.099 kb on + strand, within Pf6N2E2_3647 at 4249.100 kb on - strand, within Pf6N2E2_3647 at 4249.100 kb on - strand, within Pf6N2E2_3647 at 4249.100 kb on - strand, within Pf6N2E2_3647 at 4249.100 kb on - strand, within Pf6N2E2_3647 at 4249.100 kb on - strand, within Pf6N2E2_3647 at 4249.100 kb on - strand, within Pf6N2E2_3647 at 4249.100 kb on - strand, within Pf6N2E2_3647 at 4249.100 kb on - strand, within Pf6N2E2_3647 at 4249.198 kb on + strand, within Pf6N2E2_3647 at 4249.199 kb on - strand, within Pf6N2E2_3647 at 4249.199 kb on - strand, within Pf6N2E2_3647 at 4249.333 kb on + strand, within Pf6N2E2_3647 at 4249.333 kb on + strand, within Pf6N2E2_3647 at 4249.681 kb on - strand at 4249.707 kb on + strand at 4249.714 kb on - strand at 4249.714 kb on - strand at 4249.714 kb on - strand at 4249.714 kb on - strand at 4249.758 kb on + strand at 4249.759 kb on - strand at 4249.768 kb on + strand at 4249.768 kb on + strand at 4249.768 kb on + strand at 4249.769 kb on - strand at 4249.769 kb on - strand at 4249.769 kb on - strand at 4249.769 kb on - strand at 4249.769 kb on - strand at 4249.771 kb on + strand at 4249.771 kb on + strand at 4249.771 kb on + strand at 4249.771 kb on + strand at 4249.771 kb on + strand at 4249.771 kb on + strand at 4249.771 kb on + strand at 4249.771 kb on + strand at 4249.772 kb on - strand at 4249.772 kb on - strand at 4249.772 kb on - strand at 4249.772 kb on - strand at 4249.772 kb on - strand at 4249.772 kb on - strand at 4249.772 kb on - strand at 4249.774 kb on + strand at 4249.775 kb on - strand at 4249.936 kb on + strand, within Pf6N2E2_3648 at 4249.936 kb on + strand, within Pf6N2E2_3648 at 4249.993 kb on + strand, within Pf6N2E2_3648 at 4249.993 kb on + strand, within Pf6N2E2_3648 at 4249.993 kb on + strand, within Pf6N2E2_3648 at 4249.993 kb on + strand, within Pf6N2E2_3648 at 4249.994 kb on - strand, within Pf6N2E2_3648 at 4249.994 kb on - strand, within Pf6N2E2_3648 at 4249.994 kb on - strand, within Pf6N2E2_3648 at 4249.994 kb on - strand, within Pf6N2E2_3648 at 4250.092 kb on + strand at 4250.092 kb on + strand at 4250.093 kb on - strand at 4250.278 kb on - strand at 4250.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 4,248,985 + Pf6N2E2_3647 0.25 +0.4 4,248,985 + Pf6N2E2_3647 0.25 +1.4 4,248,985 + Pf6N2E2_3647 0.25 +0.3 4,248,985 + Pf6N2E2_3647 0.25 +1.6 4,248,986 - Pf6N2E2_3647 0.25 -0.8 4,248,986 - Pf6N2E2_3647 0.25 +0.6 4,248,986 - Pf6N2E2_3647 0.25 +0.5 4,248,986 - Pf6N2E2_3647 0.25 -1.0 4,249,099 + Pf6N2E2_3647 0.37 +0.1 4,249,099 + Pf6N2E2_3647 0.37 +1.5 4,249,099 + Pf6N2E2_3647 0.37 +0.8 4,249,099 + Pf6N2E2_3647 0.37 +0.8 4,249,099 + Pf6N2E2_3647 0.37 +0.6 4,249,099 + Pf6N2E2_3647 0.37 +2.8 4,249,099 + Pf6N2E2_3647 0.37 +1.3 4,249,099 + Pf6N2E2_3647 0.37 +2.5 4,249,099 + Pf6N2E2_3647 0.37 +1.2 4,249,100 - Pf6N2E2_3647 0.38 +0.1 4,249,100 - Pf6N2E2_3647 0.38 -0.2 4,249,100 - Pf6N2E2_3647 0.38 +0.3 4,249,100 - Pf6N2E2_3647 0.38 +0.6 4,249,100 - Pf6N2E2_3647 0.38 +0.0 4,249,100 - Pf6N2E2_3647 0.38 +2.0 4,249,100 - Pf6N2E2_3647 0.38 +0.2 4,249,100 - Pf6N2E2_3647 0.38 -0.5 4,249,198 + Pf6N2E2_3647 0.49 +2.2 4,249,199 - Pf6N2E2_3647 0.49 -0.6 4,249,199 - Pf6N2E2_3647 0.49 +0.7 4,249,333 + Pf6N2E2_3647 0.64 +2.7 4,249,333 + Pf6N2E2_3647 0.64 +0.9 4,249,681 - -0.7 4,249,707 + +0.3 4,249,714 - +1.0 4,249,714 - +0.1 4,249,714 - +0.5 4,249,714 - +0.3 4,249,758 + -0.8 4,249,759 - +0.1 4,249,768 + -0.6 4,249,768 + -1.1 4,249,768 + -1.0 4,249,769 - -1.3 4,249,769 - -0.9 4,249,769 - -1.9 4,249,769 - -1.5 4,249,769 - -1.1 4,249,771 + -0.6 4,249,771 + -1.2 4,249,771 + -2.0 4,249,771 + -0.6 4,249,771 + -1.9 4,249,771 + -0.8 4,249,771 + -0.6 4,249,771 + -0.3 4,249,772 - -1.3 4,249,772 - -1.0 4,249,772 - -3.5 4,249,772 - -1.8 4,249,772 - -2.3 4,249,772 - -0.2 4,249,772 - -2.0 4,249,774 + +1.0 4,249,775 - +0.4 4,249,936 + Pf6N2E2_3648 0.53 -0.7 4,249,936 + Pf6N2E2_3648 0.53 -1.0 4,249,993 + Pf6N2E2_3648 0.70 -1.1 4,249,993 + Pf6N2E2_3648 0.70 -0.7 4,249,993 + Pf6N2E2_3648 0.70 -3.2 4,249,993 + Pf6N2E2_3648 0.70 +0.1 4,249,994 - Pf6N2E2_3648 0.71 -0.5 4,249,994 - Pf6N2E2_3648 0.71 -1.0 4,249,994 - Pf6N2E2_3648 0.71 +1.0 4,249,994 - Pf6N2E2_3648 0.71 -0.6 4,250,092 + -0.4 4,250,092 + -0.6 4,250,093 - -0.3 4,250,278 - +0.3 4,250,278 - -0.1
Or see this region's nucleotide sequence