Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3648

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3647 and Pf6N2E2_3648 are separated by 103 nucleotidesPf6N2E2_3648 and Pf6N2E2_3649 are separated by 11 nucleotidesPf6N2E2_3649 and Pf6N2E2_3650 are separated by 60 nucleotides Pf6N2E2_3647 - LysR family transcriptional regulator PA4989, at 4,248,765 to 4,249,655 _3647 Pf6N2E2_3648 - Ethidium bromide-methyl viologen resistance protein EmrE, at 4,249,759 to 4,250,091 _3648 Pf6N2E2_3649 - hypothetical protein, at 4,250,103 to 4,250,252 _3649 Pf6N2E2_3650 - Oxidoreductase, FAD-binding, at 4,250,313 to 4,251,488 _3650 Position (kb) 4249 4250 4251Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4248.985 kb on + strand, within Pf6N2E2_3647at 4248.985 kb on + strand, within Pf6N2E2_3647at 4248.985 kb on + strand, within Pf6N2E2_3647at 4248.985 kb on + strand, within Pf6N2E2_3647at 4248.986 kb on - strand, within Pf6N2E2_3647at 4248.986 kb on - strand, within Pf6N2E2_3647at 4248.986 kb on - strand, within Pf6N2E2_3647at 4248.986 kb on - strand, within Pf6N2E2_3647at 4249.099 kb on + strand, within Pf6N2E2_3647at 4249.099 kb on + strand, within Pf6N2E2_3647at 4249.099 kb on + strand, within Pf6N2E2_3647at 4249.099 kb on + strand, within Pf6N2E2_3647at 4249.099 kb on + strand, within Pf6N2E2_3647at 4249.099 kb on + strand, within Pf6N2E2_3647at 4249.099 kb on + strand, within Pf6N2E2_3647at 4249.099 kb on + strand, within Pf6N2E2_3647at 4249.099 kb on + strand, within Pf6N2E2_3647at 4249.100 kb on - strand, within Pf6N2E2_3647at 4249.100 kb on - strand, within Pf6N2E2_3647at 4249.100 kb on - strand, within Pf6N2E2_3647at 4249.100 kb on - strand, within Pf6N2E2_3647at 4249.100 kb on - strand, within Pf6N2E2_3647at 4249.100 kb on - strand, within Pf6N2E2_3647at 4249.100 kb on - strand, within Pf6N2E2_3647at 4249.100 kb on - strand, within Pf6N2E2_3647at 4249.198 kb on + strand, within Pf6N2E2_3647at 4249.199 kb on - strand, within Pf6N2E2_3647at 4249.199 kb on - strand, within Pf6N2E2_3647at 4249.333 kb on + strand, within Pf6N2E2_3647at 4249.333 kb on + strand, within Pf6N2E2_3647at 4249.681 kb on - strandat 4249.707 kb on + strandat 4249.714 kb on - strandat 4249.714 kb on - strandat 4249.714 kb on - strandat 4249.714 kb on - strandat 4249.758 kb on + strandat 4249.759 kb on - strandat 4249.768 kb on + strandat 4249.768 kb on + strandat 4249.768 kb on + strandat 4249.769 kb on - strandat 4249.769 kb on - strandat 4249.769 kb on - strandat 4249.769 kb on - strandat 4249.769 kb on - strandat 4249.771 kb on + strandat 4249.771 kb on + strandat 4249.771 kb on + strandat 4249.771 kb on + strandat 4249.771 kb on + strandat 4249.771 kb on + strandat 4249.771 kb on + strandat 4249.771 kb on + strandat 4249.772 kb on - strandat 4249.772 kb on - strandat 4249.772 kb on - strandat 4249.772 kb on - strandat 4249.772 kb on - strandat 4249.772 kb on - strandat 4249.772 kb on - strandat 4249.774 kb on + strandat 4249.775 kb on - strandat 4249.936 kb on + strand, within Pf6N2E2_3648at 4249.936 kb on + strand, within Pf6N2E2_3648at 4249.993 kb on + strand, within Pf6N2E2_3648at 4249.993 kb on + strand, within Pf6N2E2_3648at 4249.993 kb on + strand, within Pf6N2E2_3648at 4249.993 kb on + strand, within Pf6N2E2_3648at 4249.994 kb on - strand, within Pf6N2E2_3648at 4249.994 kb on - strand, within Pf6N2E2_3648at 4249.994 kb on - strand, within Pf6N2E2_3648at 4249.994 kb on - strand, within Pf6N2E2_3648at 4250.092 kb on + strandat 4250.092 kb on + strandat 4250.093 kb on - strandat 4250.278 kb on - strandat 4250.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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4,248,985 + Pf6N2E2_3647 0.25 +0.4
4,248,985 + Pf6N2E2_3647 0.25 +1.4
4,248,985 + Pf6N2E2_3647 0.25 +0.3
4,248,985 + Pf6N2E2_3647 0.25 +1.6
4,248,986 - Pf6N2E2_3647 0.25 -0.8
4,248,986 - Pf6N2E2_3647 0.25 +0.6
4,248,986 - Pf6N2E2_3647 0.25 +0.5
4,248,986 - Pf6N2E2_3647 0.25 -1.0
4,249,099 + Pf6N2E2_3647 0.37 +0.1
4,249,099 + Pf6N2E2_3647 0.37 +1.5
4,249,099 + Pf6N2E2_3647 0.37 +0.8
4,249,099 + Pf6N2E2_3647 0.37 +0.8
4,249,099 + Pf6N2E2_3647 0.37 +0.6
4,249,099 + Pf6N2E2_3647 0.37 +2.8
4,249,099 + Pf6N2E2_3647 0.37 +1.3
4,249,099 + Pf6N2E2_3647 0.37 +2.5
4,249,099 + Pf6N2E2_3647 0.37 +1.2
4,249,100 - Pf6N2E2_3647 0.38 +0.1
4,249,100 - Pf6N2E2_3647 0.38 -0.2
4,249,100 - Pf6N2E2_3647 0.38 +0.3
4,249,100 - Pf6N2E2_3647 0.38 +0.6
4,249,100 - Pf6N2E2_3647 0.38 +0.0
4,249,100 - Pf6N2E2_3647 0.38 +2.0
4,249,100 - Pf6N2E2_3647 0.38 +0.2
4,249,100 - Pf6N2E2_3647 0.38 -0.5
4,249,198 + Pf6N2E2_3647 0.49 +2.2
4,249,199 - Pf6N2E2_3647 0.49 -0.6
4,249,199 - Pf6N2E2_3647 0.49 +0.7
4,249,333 + Pf6N2E2_3647 0.64 +2.7
4,249,333 + Pf6N2E2_3647 0.64 +0.9
4,249,681 - -0.7
4,249,707 + +0.3
4,249,714 - +1.0
4,249,714 - +0.1
4,249,714 - +0.5
4,249,714 - +0.3
4,249,758 + -0.8
4,249,759 - +0.1
4,249,768 + -0.6
4,249,768 + -1.1
4,249,768 + -1.0
4,249,769 - -1.3
4,249,769 - -0.9
4,249,769 - -1.9
4,249,769 - -1.5
4,249,769 - -1.1
4,249,771 + -0.6
4,249,771 + -1.2
4,249,771 + -2.0
4,249,771 + -0.6
4,249,771 + -1.9
4,249,771 + -0.8
4,249,771 + -0.6
4,249,771 + -0.3
4,249,772 - -1.3
4,249,772 - -1.0
4,249,772 - -3.5
4,249,772 - -1.8
4,249,772 - -2.3
4,249,772 - -0.2
4,249,772 - -2.0
4,249,774 + +1.0
4,249,775 - +0.4
4,249,936 + Pf6N2E2_3648 0.53 -0.7
4,249,936 + Pf6N2E2_3648 0.53 -1.0
4,249,993 + Pf6N2E2_3648 0.70 -1.1
4,249,993 + Pf6N2E2_3648 0.70 -0.7
4,249,993 + Pf6N2E2_3648 0.70 -3.2
4,249,993 + Pf6N2E2_3648 0.70 +0.1
4,249,994 - Pf6N2E2_3648 0.71 -0.5
4,249,994 - Pf6N2E2_3648 0.71 -1.0
4,249,994 - Pf6N2E2_3648 0.71 +1.0
4,249,994 - Pf6N2E2_3648 0.71 -0.6
4,250,092 + -0.4
4,250,092 + -0.6
4,250,093 - -0.3
4,250,278 - +0.3
4,250,278 - -0.1

Or see this region's nucleotide sequence