Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3616 and Pf6N2E2_3617 overlap by 4 nucleotides Pf6N2E2_3617 and Pf6N2E2_3618 are separated by 3 nucleotides Pf6N2E2_3618 and Pf6N2E2_3619 overlap by 13 nucleotides
Pf6N2E2_3616 - DNA mismatch repair protein MutL, at 4,210,481 to 4,212,394
_3616
Pf6N2E2_3617 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 4,212,391 to 4,213,818
_3617
Pf6N2E2_3618 - TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 4,213,822 to 4,214,289
_3618
Pf6N2E2_3619 - NAD(P)HX epimerase / NAD(P)HX dehydratase, at 4,214,277 to 4,215,776
_3619
Position (kb)
4212
4213
4214 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4211.404 kb on - strand, within Pf6N2E2_3616 at 4211.442 kb on - strand, within Pf6N2E2_3616 at 4211.442 kb on - strand, within Pf6N2E2_3616 at 4211.442 kb on - strand, within Pf6N2E2_3616 at 4211.463 kb on - strand, within Pf6N2E2_3616 at 4211.463 kb on - strand, within Pf6N2E2_3616 at 4211.463 kb on - strand, within Pf6N2E2_3616 at 4211.463 kb on - strand, within Pf6N2E2_3616 at 4211.463 kb on - strand, within Pf6N2E2_3616 at 4211.601 kb on + strand, within Pf6N2E2_3616 at 4211.602 kb on - strand, within Pf6N2E2_3616 at 4211.602 kb on - strand, within Pf6N2E2_3616 at 4211.608 kb on - strand, within Pf6N2E2_3616 at 4212.038 kb on - strand, within Pf6N2E2_3616 at 4212.596 kb on + strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4212.597 kb on - strand, within Pf6N2E2_3617 at 4213.804 kb on - strand at 4213.824 kb on - strand at 4214.271 kb on - strand at 4214.578 kb on + strand, within Pf6N2E2_3619 at 4214.579 kb on - strand, within Pf6N2E2_3619 at 4214.743 kb on - strand, within Pf6N2E2_3619 at 4214.743 kb on - strand, within Pf6N2E2_3619 at 4214.743 kb on - strand, within Pf6N2E2_3619 at 4214.743 kb on - strand, within Pf6N2E2_3619 at 4214.743 kb on - strand, within Pf6N2E2_3619
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 4,211,404 - Pf6N2E2_3616 0.48 -0.7 4,211,442 - Pf6N2E2_3616 0.50 -0.8 4,211,442 - Pf6N2E2_3616 0.50 +0.4 4,211,442 - Pf6N2E2_3616 0.50 +0.2 4,211,463 - Pf6N2E2_3616 0.51 +0.1 4,211,463 - Pf6N2E2_3616 0.51 +1.1 4,211,463 - Pf6N2E2_3616 0.51 -0.4 4,211,463 - Pf6N2E2_3616 0.51 -0.4 4,211,463 - Pf6N2E2_3616 0.51 -0.5 4,211,601 + Pf6N2E2_3616 0.59 +0.9 4,211,602 - Pf6N2E2_3616 0.59 +0.4 4,211,602 - Pf6N2E2_3616 0.59 +1.8 4,211,608 - Pf6N2E2_3616 0.59 +0.3 4,212,038 - Pf6N2E2_3616 0.81 -0.1 4,212,596 + Pf6N2E2_3617 0.14 -2.2 4,212,597 - Pf6N2E2_3617 0.14 -1.0 4,212,597 - Pf6N2E2_3617 0.14 -3.0 4,212,597 - Pf6N2E2_3617 0.14 -1.1 4,212,597 - Pf6N2E2_3617 0.14 -0.9 4,212,597 - Pf6N2E2_3617 0.14 -1.3 4,212,597 - Pf6N2E2_3617 0.14 -2.1 4,212,597 - Pf6N2E2_3617 0.14 -0.2 4,212,597 - Pf6N2E2_3617 0.14 -3.0 4,212,597 - Pf6N2E2_3617 0.14 -1.9 4,212,597 - Pf6N2E2_3617 0.14 -3.5 4,212,597 - Pf6N2E2_3617 0.14 -2.9 4,213,804 - -2.8 4,213,824 - -1.6 4,214,271 - -1.4 4,214,578 + Pf6N2E2_3619 0.20 +0.9 4,214,579 - Pf6N2E2_3619 0.20 +0.7 4,214,743 - Pf6N2E2_3619 0.31 +0.1 4,214,743 - Pf6N2E2_3619 0.31 +0.8 4,214,743 - Pf6N2E2_3619 0.31 +0.2 4,214,743 - Pf6N2E2_3619 0.31 -0.2 4,214,743 - Pf6N2E2_3619 0.31 +1.2
Or see this region's nucleotide sequence