Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3516

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3515 and Pf6N2E2_3516 are separated by 13 nucleotidesPf6N2E2_3516 and Pf6N2E2_3517 are separated by 147 nucleotides Pf6N2E2_3515 - Probable transmembrane protein, at 4,099,860 to 4,100,942 _3515 Pf6N2E2_3516 - Probable transmembrane protein, at 4,100,956 to 4,101,090 _3516 Pf6N2E2_3517 - tRNA dihydrouridine synthase B (EC 1.-.-.-), at 4,101,238 to 4,102,245 _3517 Position (kb) 4100 4101 4102Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4100.256 kb on + strand, within Pf6N2E2_3515at 4100.256 kb on + strand, within Pf6N2E2_3515at 4100.603 kb on - strand, within Pf6N2E2_3515at 4100.603 kb on - strand, within Pf6N2E2_3515at 4100.635 kb on + strand, within Pf6N2E2_3515at 4100.635 kb on + strand, within Pf6N2E2_3515at 4100.635 kb on + strand, within Pf6N2E2_3515at 4100.635 kb on + strand, within Pf6N2E2_3515at 4100.636 kb on - strand, within Pf6N2E2_3515at 4100.636 kb on - strand, within Pf6N2E2_3515at 4100.636 kb on - strand, within Pf6N2E2_3515at 4100.636 kb on - strand, within Pf6N2E2_3515at 4100.723 kb on + strand, within Pf6N2E2_3515at 4100.723 kb on + strand, within Pf6N2E2_3515at 4100.821 kb on + strand, within Pf6N2E2_3515at 4100.821 kb on + strand, within Pf6N2E2_3515at 4100.821 kb on + strand, within Pf6N2E2_3515at 4100.821 kb on + strand, within Pf6N2E2_3515at 4100.822 kb on - strand, within Pf6N2E2_3515at 4100.822 kb on - strand, within Pf6N2E2_3515at 4100.822 kb on - strand, within Pf6N2E2_3515at 4100.822 kb on - strand, within Pf6N2E2_3515at 4100.822 kb on - strand, within Pf6N2E2_3515at 4100.923 kb on + strandat 4101.022 kb on + strand, within Pf6N2E2_3516at 4101.022 kb on + strand, within Pf6N2E2_3516at 4101.023 kb on - strand, within Pf6N2E2_3516at 4101.129 kb on + strandat 4101.129 kb on + strandat 4101.130 kb on - strandat 4101.237 kb on + strandat 4101.237 kb on + strandat 4101.237 kb on + strandat 4101.237 kb on + strandat 4101.237 kb on + strandat 4101.262 kb on + strandat 4101.262 kb on + strandat 4101.262 kb on + strandat 4101.262 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.264 kb on + strandat 4101.775 kb on + strand, within Pf6N2E2_3517at 4101.775 kb on + strand, within Pf6N2E2_3517at 4102.017 kb on + strand, within Pf6N2E2_3517at 4102.017 kb on + strand, within Pf6N2E2_3517at 4102.017 kb on + strand, within Pf6N2E2_3517at 4102.017 kb on + strand, within Pf6N2E2_3517at 4102.017 kb on + strand, within Pf6N2E2_3517at 4102.017 kb on + strand, within Pf6N2E2_3517at 4102.043 kb on + strand, within Pf6N2E2_3517at 4102.043 kb on + strand, within Pf6N2E2_3517at 4102.043 kb on + strand, within Pf6N2E2_3517at 4102.043 kb on + strand, within Pf6N2E2_3517at 4102.073 kb on + strand, within Pf6N2E2_3517

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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4,100,256 + Pf6N2E2_3515 0.37 -2.3
4,100,256 + Pf6N2E2_3515 0.37 -4.6
4,100,603 - Pf6N2E2_3515 0.69 -1.8
4,100,603 - Pf6N2E2_3515 0.69 -0.9
4,100,635 + Pf6N2E2_3515 0.72 -1.7
4,100,635 + Pf6N2E2_3515 0.72 -3.3
4,100,635 + Pf6N2E2_3515 0.72 -2.5
4,100,635 + Pf6N2E2_3515 0.72 -0.1
4,100,636 - Pf6N2E2_3515 0.72 -2.0
4,100,636 - Pf6N2E2_3515 0.72 -1.0
4,100,636 - Pf6N2E2_3515 0.72 -2.5
4,100,636 - Pf6N2E2_3515 0.72 -2.8
4,100,723 + Pf6N2E2_3515 0.80 -1.9
4,100,723 + Pf6N2E2_3515 0.80 -1.8
4,100,821 + Pf6N2E2_3515 0.89 -2.6
4,100,821 + Pf6N2E2_3515 0.89 -2.3
4,100,821 + Pf6N2E2_3515 0.89 -1.6
4,100,821 + Pf6N2E2_3515 0.89 -1.0
4,100,822 - Pf6N2E2_3515 0.89 -2.5
4,100,822 - Pf6N2E2_3515 0.89 -1.2
4,100,822 - Pf6N2E2_3515 0.89 -1.4
4,100,822 - Pf6N2E2_3515 0.89 -1.0
4,100,822 - Pf6N2E2_3515 0.89 -2.0
4,100,923 + -4.0
4,101,022 + Pf6N2E2_3516 0.49 -2.9
4,101,022 + Pf6N2E2_3516 0.49 -3.8
4,101,023 - Pf6N2E2_3516 0.50 -0.4
4,101,129 + +0.5
4,101,129 + -0.7
4,101,130 - +0.3
4,101,237 + -1.3
4,101,237 + +0.3
4,101,237 + +1.0
4,101,237 + +0.7
4,101,237 + -0.2
4,101,262 + +0.0
4,101,262 + +0.6
4,101,262 + +0.6
4,101,262 + +0.3
4,101,264 + +1.1
4,101,264 + +0.4
4,101,264 + +0.4
4,101,264 + +0.8
4,101,264 + +0.2
4,101,264 + -0.3
4,101,264 + -1.0
4,101,264 + +1.4
4,101,264 + +0.2
4,101,264 + -2.1
4,101,264 + +0.5
4,101,264 + -1.5
4,101,264 + +0.8
4,101,264 + -0.7
4,101,264 + +0.7
4,101,264 + +0.3
4,101,264 + -0.6
4,101,264 + +0.7
4,101,775 + Pf6N2E2_3517 0.53 +0.4
4,101,775 + Pf6N2E2_3517 0.53 +0.8
4,102,017 + Pf6N2E2_3517 0.77 +0.4
4,102,017 + Pf6N2E2_3517 0.77 -0.7
4,102,017 + Pf6N2E2_3517 0.77 +0.3
4,102,017 + Pf6N2E2_3517 0.77 -0.6
4,102,017 + Pf6N2E2_3517 0.77 -0.5
4,102,017 + Pf6N2E2_3517 0.77 -0.2
4,102,043 + Pf6N2E2_3517 0.80 +0.2
4,102,043 + Pf6N2E2_3517 0.80 -0.3
4,102,043 + Pf6N2E2_3517 0.80 -0.4
4,102,043 + Pf6N2E2_3517 0.80 -0.8
4,102,073 + Pf6N2E2_3517 0.83 -0.0

Or see this region's nucleotide sequence