Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3488

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3487 and Pf6N2E2_3488 overlap by 4 nucleotidesPf6N2E2_3488 and Pf6N2E2_3489 are separated by 291 nucleotides Pf6N2E2_3487 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 4,067,219 to 4,069,612 _3487 Pf6N2E2_3488 - Cu(I)-responsive transcriptional regulator, at 4,069,609 to 4,070,022 _3488 Pf6N2E2_3489 - FIG00956297: hypothetical protein, at 4,070,314 to 4,071,207 _3489 Position (kb) 4069 4070 4071Strain fitness (log2 ratio) -1 0 1at 4068.698 kb on - strand, within Pf6N2E2_3487at 4069.093 kb on - strand, within Pf6N2E2_3487at 4069.424 kb on + strandat 4069.424 kb on + strandat 4069.425 kb on - strandat 4069.425 kb on - strandat 4069.463 kb on + strandat 4069.464 kb on - strandat 4069.464 kb on - strandat 4069.464 kb on - strandat 4069.465 kb on + strandat 4069.465 kb on + strandat 4069.466 kb on - strandat 4069.466 kb on - strandat 4069.663 kb on + strand, within Pf6N2E2_3488at 4069.663 kb on + strand, within Pf6N2E2_3488at 4069.666 kb on + strand, within Pf6N2E2_3488at 4069.666 kb on + strand, within Pf6N2E2_3488at 4069.666 kb on + strand, within Pf6N2E2_3488at 4069.667 kb on - strand, within Pf6N2E2_3488at 4069.667 kb on - strand, within Pf6N2E2_3488at 4069.667 kb on - strand, within Pf6N2E2_3488at 4069.667 kb on - strand, within Pf6N2E2_3488at 4069.723 kb on + strand, within Pf6N2E2_3488at 4070.050 kb on - strandat 4070.066 kb on + strandat 4070.088 kb on + strandat 4070.094 kb on + strandat 4070.094 kb on + strandat 4070.094 kb on + strandat 4070.094 kb on + strandat 4070.095 kb on - strandat 4070.095 kb on - strandat 4070.095 kb on - strandat 4070.095 kb on - strandat 4070.269 kb on + strandat 4070.269 kb on + strandat 4070.269 kb on + strandat 4070.269 kb on + strandat 4070.270 kb on - strandat 4070.284 kb on - strandat 4070.510 kb on + strand, within Pf6N2E2_3489at 4070.510 kb on + strand, within Pf6N2E2_3489at 4070.510 kb on + strand, within Pf6N2E2_3489at 4070.510 kb on + strand, within Pf6N2E2_3489at 4070.511 kb on - strand, within Pf6N2E2_3489at 4070.511 kb on - strand, within Pf6N2E2_3489at 4070.511 kb on - strand, within Pf6N2E2_3489at 4070.511 kb on - strand, within Pf6N2E2_3489at 4070.534 kb on + strand, within Pf6N2E2_3489at 4070.534 kb on + strand, within Pf6N2E2_3489at 4070.535 kb on - strand, within Pf6N2E2_3489at 4070.535 kb on - strand, within Pf6N2E2_3489at 4070.573 kb on + strand, within Pf6N2E2_3489at 4070.574 kb on - strand, within Pf6N2E2_3489at 4070.756 kb on + strand, within Pf6N2E2_3489at 4070.757 kb on - strand, within Pf6N2E2_3489at 4070.757 kb on - strand, within Pf6N2E2_3489at 4070.765 kb on + strand, within Pf6N2E2_3489at 4070.765 kb on + strand, within Pf6N2E2_3489at 4070.873 kb on + strand, within Pf6N2E2_3489at 4070.874 kb on - strand, within Pf6N2E2_3489

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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4,068,698 - Pf6N2E2_3487 0.62 +0.6
4,069,093 - Pf6N2E2_3487 0.78 -0.5
4,069,424 + +1.0
4,069,424 + -0.4
4,069,425 - -0.2
4,069,425 - -0.0
4,069,463 + +0.8
4,069,464 - +1.3
4,069,464 - +0.8
4,069,464 - +0.5
4,069,465 + +1.3
4,069,465 + +0.4
4,069,466 - +1.0
4,069,466 - +0.5
4,069,663 + Pf6N2E2_3488 0.13 -0.1
4,069,663 + Pf6N2E2_3488 0.13 -0.3
4,069,666 + Pf6N2E2_3488 0.14 +1.0
4,069,666 + Pf6N2E2_3488 0.14 +0.2
4,069,666 + Pf6N2E2_3488 0.14 +0.2
4,069,667 - Pf6N2E2_3488 0.14 +0.6
4,069,667 - Pf6N2E2_3488 0.14 +0.1
4,069,667 - Pf6N2E2_3488 0.14 +0.6
4,069,667 - Pf6N2E2_3488 0.14 +0.9
4,069,723 + Pf6N2E2_3488 0.28 +0.4
4,070,050 - +0.4
4,070,066 + +1.0
4,070,088 + +0.2
4,070,094 + -0.1
4,070,094 + -0.3
4,070,094 + +0.5
4,070,094 + -0.8
4,070,095 - +0.0
4,070,095 - -0.1
4,070,095 - +1.2
4,070,095 - -0.2
4,070,269 + -0.5
4,070,269 + +0.6
4,070,269 + -0.5
4,070,269 + -1.1
4,070,270 - -1.6
4,070,284 - -0.2
4,070,510 + Pf6N2E2_3489 0.22 +0.2
4,070,510 + Pf6N2E2_3489 0.22 -0.5
4,070,510 + Pf6N2E2_3489 0.22 -0.3
4,070,510 + Pf6N2E2_3489 0.22 +0.3
4,070,511 - Pf6N2E2_3489 0.22 -0.7
4,070,511 - Pf6N2E2_3489 0.22 +0.6
4,070,511 - Pf6N2E2_3489 0.22 +0.2
4,070,511 - Pf6N2E2_3489 0.22 -0.1
4,070,534 + Pf6N2E2_3489 0.25 +0.2
4,070,534 + Pf6N2E2_3489 0.25 +0.4
4,070,535 - Pf6N2E2_3489 0.25 +0.3
4,070,535 - Pf6N2E2_3489 0.25 +0.8
4,070,573 + Pf6N2E2_3489 0.29 +0.3
4,070,574 - Pf6N2E2_3489 0.29 +0.1
4,070,756 + Pf6N2E2_3489 0.49 -0.5
4,070,757 - Pf6N2E2_3489 0.50 +0.1
4,070,757 - Pf6N2E2_3489 0.50 +0.1
4,070,765 + Pf6N2E2_3489 0.50 -0.0
4,070,765 + Pf6N2E2_3489 0.50 -0.7
4,070,873 + Pf6N2E2_3489 0.63 -0.2
4,070,874 - Pf6N2E2_3489 0.63 -0.0

Or see this region's nucleotide sequence