Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3258

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3256 and Pf6N2E2_3257 overlap by 4 nucleotidesPf6N2E2_3257 and Pf6N2E2_3258 are separated by 11 nucleotidesPf6N2E2_3258 and Pf6N2E2_3259 overlap by 1 nucleotidesPf6N2E2_3259 and Pf6N2E2_3260 overlap by 1 nucleotides Pf6N2E2_3256 - Uncharacterized protein YrbB, at 3,766,447 to 3,766,764 _3256 Pf6N2E2_3257 - Uncharacterized ABC transporter, auxiliary component YrbC, at 3,766,761 to 3,767,414 _3257 Pf6N2E2_3258 - Uncharacterized ABC transporter, periplasmic component YrbD, at 3,767,426 to 3,767,893 _3258 Pf6N2E2_3259 - Uncharacterized ABC transporter, permease component YrbE, at 3,767,893 to 3,768,690 _3259 Pf6N2E2_3260 - Uncharacterized ABC transporter, ATP-binding protein YrbF, at 3,768,690 to 3,769,499 _3260 Position (kb) 3767 3768Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3766.489 kb on + strand, within Pf6N2E2_3256at 3766.966 kb on + strand, within Pf6N2E2_3257at 3766.978 kb on + strand, within Pf6N2E2_3257at 3766.979 kb on - strand, within Pf6N2E2_3257at 3767.074 kb on + strand, within Pf6N2E2_3257at 3767.074 kb on + strand, within Pf6N2E2_3257at 3767.075 kb on - strand, within Pf6N2E2_3257at 3767.167 kb on + strand, within Pf6N2E2_3257at 3767.167 kb on + strand, within Pf6N2E2_3257at 3767.167 kb on + strand, within Pf6N2E2_3257at 3767.168 kb on - strand, within Pf6N2E2_3257at 3767.242 kb on + strandat 3767.243 kb on - strand, within Pf6N2E2_3257at 3767.243 kb on - strand, within Pf6N2E2_3257at 3767.243 kb on - strand, within Pf6N2E2_3257at 3767.267 kb on - strand, within Pf6N2E2_3257at 3767.406 kb on - strandat 3767.562 kb on + strand, within Pf6N2E2_3258at 3767.562 kb on + strandat 3767.563 kb on - strand, within Pf6N2E2_3258at 3767.563 kb on - strand, within Pf6N2E2_3258at 3767.563 kb on - strand, within Pf6N2E2_3258at 3767.563 kb on - strand, within Pf6N2E2_3258at 3767.563 kb on - strand, within Pf6N2E2_3258at 3767.594 kb on - strand, within Pf6N2E2_3258at 3767.767 kb on - strand, within Pf6N2E2_3258at 3767.773 kb on + strand, within Pf6N2E2_3258at 3767.773 kb on + strand, within Pf6N2E2_3258at 3767.775 kb on + strand, within Pf6N2E2_3258at 3767.776 kb on - strand, within Pf6N2E2_3258at 3767.776 kb on - strand, within Pf6N2E2_3258at 3767.776 kb on - strand, within Pf6N2E2_3258at 3767.779 kb on + strand, within Pf6N2E2_3258at 3767.779 kb on + strand, within Pf6N2E2_3258at 3767.779 kb on + strand, within Pf6N2E2_3258at 3767.780 kb on - strandat 3768.014 kb on + strand, within Pf6N2E2_3259at 3768.055 kb on + strand, within Pf6N2E2_3259at 3768.137 kb on + strand, within Pf6N2E2_3259at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.853 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260at 3768.857 kb on + strand, within Pf6N2E2_3260

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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3,766,489 + Pf6N2E2_3256 0.13 -2.1
3,766,966 + Pf6N2E2_3257 0.31 -3.6
3,766,978 + Pf6N2E2_3257 0.33 -2.5
3,766,979 - Pf6N2E2_3257 0.33 -2.3
3,767,074 + Pf6N2E2_3257 0.48 -2.3
3,767,074 + Pf6N2E2_3257 0.48 -2.3
3,767,075 - Pf6N2E2_3257 0.48 -0.8
3,767,167 + Pf6N2E2_3257 0.62 -2.0
3,767,167 + Pf6N2E2_3257 0.62 -0.8
3,767,167 + Pf6N2E2_3257 0.62 -0.8
3,767,168 - Pf6N2E2_3257 0.62 -2.1
3,767,242 + +1.2
3,767,243 - Pf6N2E2_3257 0.74 -1.6
3,767,243 - Pf6N2E2_3257 0.74 -2.4
3,767,243 - Pf6N2E2_3257 0.74 -2.1
3,767,267 - Pf6N2E2_3257 0.77 -2.8
3,767,406 - -1.8
3,767,562 + Pf6N2E2_3258 0.29 -0.1
3,767,562 + -0.4
3,767,563 - Pf6N2E2_3258 0.29 -0.8
3,767,563 - Pf6N2E2_3258 0.29 -2.7
3,767,563 - Pf6N2E2_3258 0.29 -1.1
3,767,563 - Pf6N2E2_3258 0.29 -3.1
3,767,563 - Pf6N2E2_3258 0.29 -0.8
3,767,594 - Pf6N2E2_3258 0.36 -2.9
3,767,767 - Pf6N2E2_3258 0.73 -2.9
3,767,773 + Pf6N2E2_3258 0.74 -3.1
3,767,773 + Pf6N2E2_3258 0.74 -2.5
3,767,775 + Pf6N2E2_3258 0.75 -3.2
3,767,776 - Pf6N2E2_3258 0.75 -2.7
3,767,776 - Pf6N2E2_3258 0.75 -0.4
3,767,776 - Pf6N2E2_3258 0.75 -1.1
3,767,779 + Pf6N2E2_3258 0.75 -1.6
3,767,779 + Pf6N2E2_3258 0.75 -2.4
3,767,779 + Pf6N2E2_3258 0.75 -3.1
3,767,780 - +1.2
3,768,014 + Pf6N2E2_3259 0.15 -1.8
3,768,055 + Pf6N2E2_3259 0.20 -1.1
3,768,137 + Pf6N2E2_3259 0.31 -1.3
3,768,853 + Pf6N2E2_3260 0.20 -1.8
3,768,853 + Pf6N2E2_3260 0.20 -2.8
3,768,853 + Pf6N2E2_3260 0.20 -1.6
3,768,853 + Pf6N2E2_3260 0.20 +0.2
3,768,853 + Pf6N2E2_3260 0.20 -2.4
3,768,853 + Pf6N2E2_3260 0.20 -1.8
3,768,853 + Pf6N2E2_3260 0.20 -1.1
3,768,853 + Pf6N2E2_3260 0.20 -3.9
3,768,853 + Pf6N2E2_3260 0.20 -2.3
3,768,853 + Pf6N2E2_3260 0.20 -2.5
3,768,857 + Pf6N2E2_3260 0.21 -2.1
3,768,857 + Pf6N2E2_3260 0.21 -3.7
3,768,857 + Pf6N2E2_3260 0.21 -2.0
3,768,857 + Pf6N2E2_3260 0.21 -1.1
3,768,857 + Pf6N2E2_3260 0.21 -2.1
3,768,857 + Pf6N2E2_3260 0.21 -1.3
3,768,857 + Pf6N2E2_3260 0.21 -3.0
3,768,857 + Pf6N2E2_3260 0.21 -2.7
3,768,857 + Pf6N2E2_3260 0.21 -4.0
3,768,857 + Pf6N2E2_3260 0.21 -2.0

Or see this region's nucleotide sequence