Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3218 and Pf6N2E2_3219 are separated by 42 nucleotides Pf6N2E2_3219 and Pf6N2E2_3220 overlap by 6 nucleotides
Pf6N2E2_3218 - Large exoproteins involved in heme utilization or adhesion, at 3,717,553 to 3,725,181
_3218
Pf6N2E2_3219 - hypothetical protein, at 3,725,224 to 3,725,718
_3219
Pf6N2E2_3220 - hypothetical protein, at 3,725,713 to 3,727,221
_3220
Position (kb)
3725
3726 Strain fitness (log2 ratio)
-2
-1
0
1 at 3724.581 kb on + strand at 3724.710 kb on - strand at 3724.710 kb on - strand at 3724.768 kb on + strand at 3724.861 kb on + strand at 3724.861 kb on + strand at 3724.862 kb on - strand at 3724.971 kb on + strand at 3725.096 kb on - strand at 3725.122 kb on - strand at 3725.164 kb on + strand at 3725.165 kb on - strand at 3725.165 kb on - strand at 3725.235 kb on + strand at 3725.235 kb on + strand at 3725.238 kb on + strand at 3725.238 kb on + strand at 3725.238 kb on + strand at 3725.238 kb on + strand at 3725.476 kb on + strand, within Pf6N2E2_3219 at 3725.476 kb on + strand, within Pf6N2E2_3219 at 3725.477 kb on - strand, within Pf6N2E2_3219 at 3725.477 kb on - strand, within Pf6N2E2_3219 at 3725.477 kb on - strand, within Pf6N2E2_3219 at 3725.673 kb on + strand at 3725.791 kb on + strand at 3725.791 kb on + strand at 3725.792 kb on - strand at 3725.795 kb on - strand at 3725.795 kb on - strand at 3725.795 kb on - strand at 3725.911 kb on + strand, within Pf6N2E2_3220 at 3726.127 kb on + strand, within Pf6N2E2_3220 at 3726.128 kb on - strand, within Pf6N2E2_3220 at 3726.142 kb on + strand, within Pf6N2E2_3220 at 3726.142 kb on + strand, within Pf6N2E2_3220 at 3726.142 kb on + strand, within Pf6N2E2_3220 at 3726.142 kb on + strand, within Pf6N2E2_3220 at 3726.142 kb on + strand, within Pf6N2E2_3220 at 3726.143 kb on - strand, within Pf6N2E2_3220 at 3726.143 kb on - strand, within Pf6N2E2_3220 at 3726.143 kb on - strand, within Pf6N2E2_3220 at 3726.143 kb on - strand, within Pf6N2E2_3220 at 3726.143 kb on - strand, within Pf6N2E2_3220 at 3726.143 kb on - strand, within Pf6N2E2_3220 at 3726.143 kb on - strand, within Pf6N2E2_3220 at 3726.154 kb on + strand, within Pf6N2E2_3220 at 3726.154 kb on + strand, within Pf6N2E2_3220 at 3726.154 kb on + strand, within Pf6N2E2_3220 at 3726.155 kb on - strand, within Pf6N2E2_3220 at 3726.155 kb on - strand, within Pf6N2E2_3220 at 3726.160 kb on + strand, within Pf6N2E2_3220 at 3726.227 kb on - strand, within Pf6N2E2_3220 at 3726.359 kb on - strand, within Pf6N2E2_3220 at 3726.495 kb on + strand, within Pf6N2E2_3220 at 3726.499 kb on + strand, within Pf6N2E2_3220 at 3726.500 kb on - strand, within Pf6N2E2_3220 at 3726.500 kb on - strand, within Pf6N2E2_3220 at 3726.703 kb on + strand, within Pf6N2E2_3220 at 3726.704 kb on - strand, within Pf6N2E2_3220 at 3726.704 kb on - strand, within Pf6N2E2_3220 at 3726.704 kb on - strand, within Pf6N2E2_3220 at 3726.705 kb on + strand, within Pf6N2E2_3220 at 3726.705 kb on + strand, within Pf6N2E2_3220 at 3726.706 kb on - strand, within Pf6N2E2_3220 at 3726.706 kb on - strand, within Pf6N2E2_3220
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 3,724,581 + +0.7 3,724,710 - +0.0 3,724,710 - +0.3 3,724,768 + +1.3 3,724,861 + +0.1 3,724,861 + +1.0 3,724,862 - +0.2 3,724,971 + -1.0 3,725,096 - -0.3 3,725,122 - +0.4 3,725,164 + +0.8 3,725,165 - +0.6 3,725,165 - +0.1 3,725,235 + -0.5 3,725,235 + -0.8 3,725,238 + -0.2 3,725,238 + +1.2 3,725,238 + -0.2 3,725,238 + -0.4 3,725,476 + Pf6N2E2_3219 0.51 +0.1 3,725,476 + Pf6N2E2_3219 0.51 -0.7 3,725,477 - Pf6N2E2_3219 0.51 -2.6 3,725,477 - Pf6N2E2_3219 0.51 -0.7 3,725,477 - Pf6N2E2_3219 0.51 -0.3 3,725,673 + -0.2 3,725,791 + +0.6 3,725,791 + +1.0 3,725,792 - +0.0 3,725,795 - +0.4 3,725,795 - +0.1 3,725,795 - +0.6 3,725,911 + Pf6N2E2_3220 0.13 -0.7 3,726,127 + Pf6N2E2_3220 0.27 +0.1 3,726,128 - Pf6N2E2_3220 0.28 -1.0 3,726,142 + Pf6N2E2_3220 0.28 +1.2 3,726,142 + Pf6N2E2_3220 0.28 +0.3 3,726,142 + Pf6N2E2_3220 0.28 +0.4 3,726,142 + Pf6N2E2_3220 0.28 -0.1 3,726,142 + Pf6N2E2_3220 0.28 -0.3 3,726,143 - Pf6N2E2_3220 0.28 +0.9 3,726,143 - Pf6N2E2_3220 0.28 -1.2 3,726,143 - Pf6N2E2_3220 0.28 +0.4 3,726,143 - Pf6N2E2_3220 0.28 +0.2 3,726,143 - Pf6N2E2_3220 0.28 +0.1 3,726,143 - Pf6N2E2_3220 0.28 -1.2 3,726,143 - Pf6N2E2_3220 0.28 +0.4 3,726,154 + Pf6N2E2_3220 0.29 +0.2 3,726,154 + Pf6N2E2_3220 0.29 +0.2 3,726,154 + Pf6N2E2_3220 0.29 -0.1 3,726,155 - Pf6N2E2_3220 0.29 -0.0 3,726,155 - Pf6N2E2_3220 0.29 +0.4 3,726,160 + Pf6N2E2_3220 0.30 -0.1 3,726,227 - Pf6N2E2_3220 0.34 -0.1 3,726,359 - Pf6N2E2_3220 0.43 +0.8 3,726,495 + Pf6N2E2_3220 0.52 +0.2 3,726,499 + Pf6N2E2_3220 0.52 -0.5 3,726,500 - Pf6N2E2_3220 0.52 -0.1 3,726,500 - Pf6N2E2_3220 0.52 -0.0 3,726,703 + Pf6N2E2_3220 0.66 +1.2 3,726,704 - Pf6N2E2_3220 0.66 -0.3 3,726,704 - Pf6N2E2_3220 0.66 +0.4 3,726,704 - Pf6N2E2_3220 0.66 -0.2 3,726,705 + Pf6N2E2_3220 0.66 +1.5 3,726,705 + Pf6N2E2_3220 0.66 -0.4 3,726,706 - Pf6N2E2_3220 0.66 +0.7 3,726,706 - Pf6N2E2_3220 0.66 -1.1
Or see this region's nucleotide sequence