Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3219

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3218 and Pf6N2E2_3219 are separated by 42 nucleotidesPf6N2E2_3219 and Pf6N2E2_3220 overlap by 6 nucleotides Pf6N2E2_3218 - Large exoproteins involved in heme utilization or adhesion, at 3,717,553 to 3,725,181 _3218 Pf6N2E2_3219 - hypothetical protein, at 3,725,224 to 3,725,718 _3219 Pf6N2E2_3220 - hypothetical protein, at 3,725,713 to 3,727,221 _3220 Position (kb) 3725 3726Strain fitness (log2 ratio) -2 -1 0 1at 3724.581 kb on + strandat 3724.710 kb on - strandat 3724.710 kb on - strandat 3724.768 kb on + strandat 3724.861 kb on + strandat 3724.861 kb on + strandat 3724.862 kb on - strandat 3724.971 kb on + strandat 3725.096 kb on - strandat 3725.122 kb on - strandat 3725.164 kb on + strandat 3725.165 kb on - strandat 3725.165 kb on - strandat 3725.235 kb on + strandat 3725.235 kb on + strandat 3725.238 kb on + strandat 3725.238 kb on + strandat 3725.238 kb on + strandat 3725.238 kb on + strandat 3725.476 kb on + strand, within Pf6N2E2_3219at 3725.476 kb on + strand, within Pf6N2E2_3219at 3725.477 kb on - strand, within Pf6N2E2_3219at 3725.477 kb on - strand, within Pf6N2E2_3219at 3725.477 kb on - strand, within Pf6N2E2_3219at 3725.673 kb on + strandat 3725.791 kb on + strandat 3725.791 kb on + strandat 3725.792 kb on - strandat 3725.795 kb on - strandat 3725.795 kb on - strandat 3725.795 kb on - strandat 3725.911 kb on + strand, within Pf6N2E2_3220at 3726.127 kb on + strand, within Pf6N2E2_3220at 3726.128 kb on - strand, within Pf6N2E2_3220at 3726.142 kb on + strand, within Pf6N2E2_3220at 3726.142 kb on + strand, within Pf6N2E2_3220at 3726.142 kb on + strand, within Pf6N2E2_3220at 3726.142 kb on + strand, within Pf6N2E2_3220at 3726.142 kb on + strand, within Pf6N2E2_3220at 3726.143 kb on - strand, within Pf6N2E2_3220at 3726.143 kb on - strand, within Pf6N2E2_3220at 3726.143 kb on - strand, within Pf6N2E2_3220at 3726.143 kb on - strand, within Pf6N2E2_3220at 3726.143 kb on - strand, within Pf6N2E2_3220at 3726.143 kb on - strand, within Pf6N2E2_3220at 3726.143 kb on - strand, within Pf6N2E2_3220at 3726.154 kb on + strand, within Pf6N2E2_3220at 3726.154 kb on + strand, within Pf6N2E2_3220at 3726.154 kb on + strand, within Pf6N2E2_3220at 3726.155 kb on - strand, within Pf6N2E2_3220at 3726.155 kb on - strand, within Pf6N2E2_3220at 3726.160 kb on + strand, within Pf6N2E2_3220at 3726.227 kb on - strand, within Pf6N2E2_3220at 3726.359 kb on - strand, within Pf6N2E2_3220at 3726.495 kb on + strand, within Pf6N2E2_3220at 3726.499 kb on + strand, within Pf6N2E2_3220at 3726.500 kb on - strand, within Pf6N2E2_3220at 3726.500 kb on - strand, within Pf6N2E2_3220at 3726.703 kb on + strand, within Pf6N2E2_3220at 3726.704 kb on - strand, within Pf6N2E2_3220at 3726.704 kb on - strand, within Pf6N2E2_3220at 3726.704 kb on - strand, within Pf6N2E2_3220at 3726.705 kb on + strand, within Pf6N2E2_3220at 3726.705 kb on + strand, within Pf6N2E2_3220at 3726.706 kb on - strand, within Pf6N2E2_3220at 3726.706 kb on - strand, within Pf6N2E2_3220

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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3,724,581 + +0.7
3,724,710 - +0.0
3,724,710 - +0.3
3,724,768 + +1.3
3,724,861 + +0.1
3,724,861 + +1.0
3,724,862 - +0.2
3,724,971 + -1.0
3,725,096 - -0.3
3,725,122 - +0.4
3,725,164 + +0.8
3,725,165 - +0.6
3,725,165 - +0.1
3,725,235 + -0.5
3,725,235 + -0.8
3,725,238 + -0.2
3,725,238 + +1.2
3,725,238 + -0.2
3,725,238 + -0.4
3,725,476 + Pf6N2E2_3219 0.51 +0.1
3,725,476 + Pf6N2E2_3219 0.51 -0.7
3,725,477 - Pf6N2E2_3219 0.51 -2.6
3,725,477 - Pf6N2E2_3219 0.51 -0.7
3,725,477 - Pf6N2E2_3219 0.51 -0.3
3,725,673 + -0.2
3,725,791 + +0.6
3,725,791 + +1.0
3,725,792 - +0.0
3,725,795 - +0.4
3,725,795 - +0.1
3,725,795 - +0.6
3,725,911 + Pf6N2E2_3220 0.13 -0.7
3,726,127 + Pf6N2E2_3220 0.27 +0.1
3,726,128 - Pf6N2E2_3220 0.28 -1.0
3,726,142 + Pf6N2E2_3220 0.28 +1.2
3,726,142 + Pf6N2E2_3220 0.28 +0.3
3,726,142 + Pf6N2E2_3220 0.28 +0.4
3,726,142 + Pf6N2E2_3220 0.28 -0.1
3,726,142 + Pf6N2E2_3220 0.28 -0.3
3,726,143 - Pf6N2E2_3220 0.28 +0.9
3,726,143 - Pf6N2E2_3220 0.28 -1.2
3,726,143 - Pf6N2E2_3220 0.28 +0.4
3,726,143 - Pf6N2E2_3220 0.28 +0.2
3,726,143 - Pf6N2E2_3220 0.28 +0.1
3,726,143 - Pf6N2E2_3220 0.28 -1.2
3,726,143 - Pf6N2E2_3220 0.28 +0.4
3,726,154 + Pf6N2E2_3220 0.29 +0.2
3,726,154 + Pf6N2E2_3220 0.29 +0.2
3,726,154 + Pf6N2E2_3220 0.29 -0.1
3,726,155 - Pf6N2E2_3220 0.29 -0.0
3,726,155 - Pf6N2E2_3220 0.29 +0.4
3,726,160 + Pf6N2E2_3220 0.30 -0.1
3,726,227 - Pf6N2E2_3220 0.34 -0.1
3,726,359 - Pf6N2E2_3220 0.43 +0.8
3,726,495 + Pf6N2E2_3220 0.52 +0.2
3,726,499 + Pf6N2E2_3220 0.52 -0.5
3,726,500 - Pf6N2E2_3220 0.52 -0.1
3,726,500 - Pf6N2E2_3220 0.52 -0.0
3,726,703 + Pf6N2E2_3220 0.66 +1.2
3,726,704 - Pf6N2E2_3220 0.66 -0.3
3,726,704 - Pf6N2E2_3220 0.66 +0.4
3,726,704 - Pf6N2E2_3220 0.66 -0.2
3,726,705 + Pf6N2E2_3220 0.66 +1.5
3,726,705 + Pf6N2E2_3220 0.66 -0.4
3,726,706 - Pf6N2E2_3220 0.66 +0.7
3,726,706 - Pf6N2E2_3220 0.66 -1.1

Or see this region's nucleotide sequence