Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3130

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3128 and Pf6N2E2_3129 are separated by 1 nucleotidesPf6N2E2_3129 and Pf6N2E2_3130 are separated by 25 nucleotidesPf6N2E2_3130 and Pf6N2E2_3131 are separated by 72 nucleotides Pf6N2E2_3128 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 3,619,634 to 3,620,671 _3128 Pf6N2E2_3129 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 3,620,673 to 3,621,620 _3129 Pf6N2E2_3130 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 3,621,646 to 3,622,428 _3130 Pf6N2E2_3131 - 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 3,622,501 to 3,623,925 _3131 Position (kb) 3621 3622 3623Strain fitness (log2 ratio) -2 -1 0 1at 3620.760 kb on + strandat 3620.761 kb on - strandat 3620.761 kb on - strandat 3620.761 kb on - strandat 3620.808 kb on + strand, within Pf6N2E2_3129at 3620.809 kb on - strand, within Pf6N2E2_3129at 3620.847 kb on + strand, within Pf6N2E2_3129at 3620.848 kb on - strand, within Pf6N2E2_3129at 3621.006 kb on + strand, within Pf6N2E2_3129at 3621.006 kb on + strand, within Pf6N2E2_3129at 3621.006 kb on + strand, within Pf6N2E2_3129at 3621.007 kb on - strand, within Pf6N2E2_3129at 3621.007 kb on - strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.009 kb on + strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.010 kb on - strand, within Pf6N2E2_3129at 3621.022 kb on - strand, within Pf6N2E2_3129at 3621.051 kb on + strand, within Pf6N2E2_3129at 3621.051 kb on + strand, within Pf6N2E2_3129at 3621.052 kb on - strand, within Pf6N2E2_3129at 3621.084 kb on + strand, within Pf6N2E2_3129at 3621.084 kb on + strand, within Pf6N2E2_3129at 3621.085 kb on - strand, within Pf6N2E2_3129at 3621.085 kb on - strand, within Pf6N2E2_3129at 3621.085 kb on - strand, within Pf6N2E2_3129at 3621.085 kb on - strand, within Pf6N2E2_3129at 3621.099 kb on + strand, within Pf6N2E2_3129at 3621.100 kb on - strand, within Pf6N2E2_3129at 3621.100 kb on - strand, within Pf6N2E2_3129at 3621.100 kb on - strand, within Pf6N2E2_3129at 3621.100 kb on - strand, within Pf6N2E2_3129at 3621.255 kb on + strand, within Pf6N2E2_3129at 3621.256 kb on - strand, within Pf6N2E2_3129at 3621.256 kb on - strand, within Pf6N2E2_3129at 3621.477 kb on + strand, within Pf6N2E2_3129at 3621.477 kb on + strand, within Pf6N2E2_3129at 3621.478 kb on - strand, within Pf6N2E2_3129at 3621.478 kb on - strand, within Pf6N2E2_3129at 3621.499 kb on - strand, within Pf6N2E2_3129at 3621.576 kb on + strandat 3621.576 kb on + strandat 3621.576 kb on + strandat 3621.576 kb on + strandat 3621.576 kb on + strandat 3621.577 kb on - strandat 3621.577 kb on - strandat 3621.577 kb on - strandat 3621.580 kb on + strandat 3621.580 kb on + strandat 3621.580 kb on + strandat 3621.581 kb on - strandat 3621.581 kb on - strandat 3621.709 kb on + strandat 3621.919 kb on - strand, within Pf6N2E2_3130at 3622.063 kb on + strand, within Pf6N2E2_3130at 3622.157 kb on - strand, within Pf6N2E2_3130at 3622.349 kb on + strand, within Pf6N2E2_3130at 3622.349 kb on + strand, within Pf6N2E2_3130at 3622.350 kb on - strandat 3622.378 kb on + strandat 3622.378 kb on + strandat 3622.379 kb on - strandat 3622.379 kb on - strandat 3622.381 kb on + strandat 3622.381 kb on + strandat 3622.381 kb on + strandat 3622.426 kb on + strandat 3622.426 kb on + strandat 3622.426 kb on + strandat 3622.427 kb on - strandat 3622.427 kb on - strandat 3622.876 kb on + strand, within Pf6N2E2_3131at 3622.948 kb on + strand, within Pf6N2E2_3131at 3622.948 kb on + strand, within Pf6N2E2_3131at 3622.949 kb on - strand, within Pf6N2E2_3131at 3623.001 kb on + strand, within Pf6N2E2_3131at 3623.087 kb on + strand, within Pf6N2E2_3131at 3623.088 kb on - strand, within Pf6N2E2_3131at 3623.088 kb on - strand, within Pf6N2E2_3131at 3623.320 kb on + strand, within Pf6N2E2_3131at 3623.321 kb on - strand, within Pf6N2E2_3131at 3623.359 kb on + strand, within Pf6N2E2_3131at 3623.360 kb on - strand, within Pf6N2E2_3131at 3623.360 kb on - strand, within Pf6N2E2_3131at 3623.360 kb on - strand, within Pf6N2E2_3131at 3623.377 kb on + strand, within Pf6N2E2_3131at 3623.377 kb on + strand, within Pf6N2E2_3131at 3623.378 kb on - strand, within Pf6N2E2_3131at 3623.378 kb on - strand, within Pf6N2E2_3131at 3623.425 kb on + strand, within Pf6N2E2_3131at 3623.425 kb on + strand, within Pf6N2E2_3131at 3623.425 kb on + strand, within Pf6N2E2_3131at 3623.426 kb on - strand, within Pf6N2E2_3131

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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3,620,760 + +0.1
3,620,761 - -0.1
3,620,761 - +0.8
3,620,761 - +0.5
3,620,808 + Pf6N2E2_3129 0.14 +0.3
3,620,809 - Pf6N2E2_3129 0.14 -0.2
3,620,847 + Pf6N2E2_3129 0.18 -0.5
3,620,848 - Pf6N2E2_3129 0.18 +0.3
3,621,006 + Pf6N2E2_3129 0.35 +0.1
3,621,006 + Pf6N2E2_3129 0.35 -0.9
3,621,006 + Pf6N2E2_3129 0.35 +0.4
3,621,007 - Pf6N2E2_3129 0.35 -0.3
3,621,007 - Pf6N2E2_3129 0.35 +0.7
3,621,009 + Pf6N2E2_3129 0.35 +0.2
3,621,009 + Pf6N2E2_3129 0.35 -0.1
3,621,009 + Pf6N2E2_3129 0.35 +0.1
3,621,009 + Pf6N2E2_3129 0.35 -0.9
3,621,009 + Pf6N2E2_3129 0.35 -0.9
3,621,009 + Pf6N2E2_3129 0.35 -1.0
3,621,009 + Pf6N2E2_3129 0.35 -0.9
3,621,009 + Pf6N2E2_3129 0.35 +0.2
3,621,009 + Pf6N2E2_3129 0.35 +1.0
3,621,010 - Pf6N2E2_3129 0.36 +0.4
3,621,010 - Pf6N2E2_3129 0.36 -0.3
3,621,010 - Pf6N2E2_3129 0.36 +0.4
3,621,010 - Pf6N2E2_3129 0.36 +0.1
3,621,010 - Pf6N2E2_3129 0.36 +0.8
3,621,010 - Pf6N2E2_3129 0.36 +0.0
3,621,010 - Pf6N2E2_3129 0.36 -0.9
3,621,010 - Pf6N2E2_3129 0.36 -0.5
3,621,010 - Pf6N2E2_3129 0.36 +1.0
3,621,010 - Pf6N2E2_3129 0.36 +0.6
3,621,022 - Pf6N2E2_3129 0.37 -0.8
3,621,051 + Pf6N2E2_3129 0.40 +0.5
3,621,051 + Pf6N2E2_3129 0.40 +0.1
3,621,052 - Pf6N2E2_3129 0.40 +0.1
3,621,084 + Pf6N2E2_3129 0.43 +0.2
3,621,084 + Pf6N2E2_3129 0.43 +0.0
3,621,085 - Pf6N2E2_3129 0.43 -0.2
3,621,085 - Pf6N2E2_3129 0.43 +0.9
3,621,085 - Pf6N2E2_3129 0.43 -0.1
3,621,085 - Pf6N2E2_3129 0.43 +0.7
3,621,099 + Pf6N2E2_3129 0.45 -1.0
3,621,100 - Pf6N2E2_3129 0.45 +1.2
3,621,100 - Pf6N2E2_3129 0.45 +0.8
3,621,100 - Pf6N2E2_3129 0.45 +0.8
3,621,100 - Pf6N2E2_3129 0.45 +0.9
3,621,255 + Pf6N2E2_3129 0.61 -0.5
3,621,256 - Pf6N2E2_3129 0.61 +0.3
3,621,256 - Pf6N2E2_3129 0.61 +0.4
3,621,477 + Pf6N2E2_3129 0.85 +0.1
3,621,477 + Pf6N2E2_3129 0.85 +0.6
3,621,478 - Pf6N2E2_3129 0.85 -0.3
3,621,478 - Pf6N2E2_3129 0.85 -0.3
3,621,499 - Pf6N2E2_3129 0.87 +0.5
3,621,576 + -0.9
3,621,576 + +0.3
3,621,576 + +0.8
3,621,576 + -1.5
3,621,576 + -0.0
3,621,577 - +0.9
3,621,577 - +0.7
3,621,577 - -1.0
3,621,580 + +0.0
3,621,580 + +0.5
3,621,580 + -0.2
3,621,581 - +0.3
3,621,581 - +1.1
3,621,709 + +0.7
3,621,919 - Pf6N2E2_3130 0.35 -1.7
3,622,063 + Pf6N2E2_3130 0.53 -1.1
3,622,157 - Pf6N2E2_3130 0.65 -1.4
3,622,349 + Pf6N2E2_3130 0.90 +0.5
3,622,349 + Pf6N2E2_3130 0.90 +0.1
3,622,350 - +1.0
3,622,378 + -0.7
3,622,378 + -1.8
3,622,379 - -1.3
3,622,379 - +0.0
3,622,381 + +0.2
3,622,381 + +0.4
3,622,381 + -0.6
3,622,426 + -0.6
3,622,426 + -0.4
3,622,426 + -0.2
3,622,427 - +0.6
3,622,427 - -0.7
3,622,876 + Pf6N2E2_3131 0.26 +0.6
3,622,948 + Pf6N2E2_3131 0.31 +1.4
3,622,948 + Pf6N2E2_3131 0.31 +1.1
3,622,949 - Pf6N2E2_3131 0.31 +0.3
3,623,001 + Pf6N2E2_3131 0.35 -0.6
3,623,087 + Pf6N2E2_3131 0.41 -0.7
3,623,088 - Pf6N2E2_3131 0.41 +0.1
3,623,088 - Pf6N2E2_3131 0.41 -1.4
3,623,320 + Pf6N2E2_3131 0.57 -0.6
3,623,321 - Pf6N2E2_3131 0.58 +0.5
3,623,359 + Pf6N2E2_3131 0.60 -0.4
3,623,360 - Pf6N2E2_3131 0.60 +1.0
3,623,360 - Pf6N2E2_3131 0.60 +0.0
3,623,360 - Pf6N2E2_3131 0.60 -1.3
3,623,377 + Pf6N2E2_3131 0.61 -1.4
3,623,377 + Pf6N2E2_3131 0.61 -0.2
3,623,378 - Pf6N2E2_3131 0.62 +0.1
3,623,378 - Pf6N2E2_3131 0.62 +0.8
3,623,425 + Pf6N2E2_3131 0.65 -0.0
3,623,425 + Pf6N2E2_3131 0.65 -0.9
3,623,425 + Pf6N2E2_3131 0.65 +1.1
3,623,426 - Pf6N2E2_3131 0.65 -0.4

Or see this region's nucleotide sequence