Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2963 and Pf6N2E2_2964 overlap by 1 nucleotides Pf6N2E2_2964 and Pf6N2E2_2965 are separated by 36 nucleotides Pf6N2E2_2965 and Pf6N2E2_2966 are separated by 102 nucleotides
Pf6N2E2_2963 - FIG003033: Helicase domain protein, at 3,454,473 to 3,456,959
_2963
Pf6N2E2_2964 - FIG006285: ICC-like protein phosphoesterase, at 3,456,959 to 3,457,615
_2964
Pf6N2E2_2965 - FIG00955308: hypothetical protein, at 3,457,652 to 3,457,858
_2965
Pf6N2E2_2966 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 3,457,961 to 3,458,527
_2966
Position (kb)
3456
3457
3458 Strain fitness (log2 ratio)
-1
0
1 at 3456.099 kb on + strand, within Pf6N2E2_2963 at 3456.099 kb on + strand, within Pf6N2E2_2963 at 3456.100 kb on - strand, within Pf6N2E2_2963 at 3456.100 kb on - strand, within Pf6N2E2_2963 at 3456.100 kb on - strand, within Pf6N2E2_2963 at 3456.100 kb on - strand, within Pf6N2E2_2963 at 3456.100 kb on - strand, within Pf6N2E2_2963 at 3456.100 kb on - strand, within Pf6N2E2_2963 at 3456.544 kb on + strand, within Pf6N2E2_2963 at 3456.544 kb on + strand, within Pf6N2E2_2963 at 3456.545 kb on - strand, within Pf6N2E2_2963 at 3456.699 kb on + strand, within Pf6N2E2_2963 at 3456.797 kb on + strand at 3456.797 kb on + strand at 3456.798 kb on - strand at 3456.798 kb on - strand at 3456.971 kb on + strand at 3457.026 kb on - strand, within Pf6N2E2_2964 at 3457.026 kb on - strand, within Pf6N2E2_2964 at 3457.086 kb on - strand, within Pf6N2E2_2964 at 3457.442 kb on + strand, within Pf6N2E2_2964 at 3457.443 kb on - strand, within Pf6N2E2_2964 at 3457.600 kb on - strand at 3457.600 kb on - strand at 3457.690 kb on + strand, within Pf6N2E2_2965 at 3457.690 kb on + strand, within Pf6N2E2_2965 at 3457.690 kb on + strand, within Pf6N2E2_2965 at 3457.690 kb on + strand, within Pf6N2E2_2965 at 3457.691 kb on - strand, within Pf6N2E2_2965 at 3457.691 kb on - strand, within Pf6N2E2_2965 at 3457.858 kb on + strand at 3457.859 kb on - strand at 3457.859 kb on - strand at 3457.859 kb on - strand at 3457.919 kb on + strand at 3457.919 kb on + strand at 3457.919 kb on + strand at 3457.919 kb on + strand at 3457.919 kb on + strand at 3457.920 kb on - strand at 3457.920 kb on - strand at 3457.920 kb on - strand at 3457.920 kb on - strand at 3457.920 kb on - strand at 3457.920 kb on - strand at 3457.920 kb on - strand at 3458.575 kb on - strand at 3458.575 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 3,456,099 + Pf6N2E2_2963 0.65 +0.2 3,456,099 + Pf6N2E2_2963 0.65 +0.1 3,456,100 - Pf6N2E2_2963 0.65 -0.1 3,456,100 - Pf6N2E2_2963 0.65 +0.2 3,456,100 - Pf6N2E2_2963 0.65 -0.5 3,456,100 - Pf6N2E2_2963 0.65 -0.0 3,456,100 - Pf6N2E2_2963 0.65 -0.5 3,456,100 - Pf6N2E2_2963 0.65 +0.4 3,456,544 + Pf6N2E2_2963 0.83 +0.0 3,456,544 + Pf6N2E2_2963 0.83 -0.8 3,456,545 - Pf6N2E2_2963 0.83 +0.5 3,456,699 + Pf6N2E2_2963 0.90 +0.6 3,456,797 + +0.2 3,456,797 + +0.1 3,456,798 - +0.4 3,456,798 - +0.0 3,456,971 + +0.2 3,457,026 - Pf6N2E2_2964 0.10 +1.2 3,457,026 - Pf6N2E2_2964 0.10 -1.0 3,457,086 - Pf6N2E2_2964 0.19 -0.5 3,457,442 + Pf6N2E2_2964 0.74 -0.9 3,457,443 - Pf6N2E2_2964 0.74 -0.7 3,457,600 - +1.6 3,457,600 - -0.8 3,457,690 + Pf6N2E2_2965 0.18 +0.2 3,457,690 + Pf6N2E2_2965 0.18 -0.4 3,457,690 + Pf6N2E2_2965 0.18 +0.1 3,457,690 + Pf6N2E2_2965 0.18 -0.1 3,457,691 - Pf6N2E2_2965 0.19 +0.4 3,457,691 - Pf6N2E2_2965 0.19 -0.7 3,457,858 + -0.0 3,457,859 - +0.7 3,457,859 - +0.2 3,457,859 - +0.0 3,457,919 + +0.0 3,457,919 + -0.2 3,457,919 + -0.1 3,457,919 + -0.2 3,457,919 + -0.5 3,457,920 - -0.2 3,457,920 - -0.7 3,457,920 - -0.4 3,457,920 - +0.5 3,457,920 - +0.6 3,457,920 - -0.4 3,457,920 - -1.4 3,458,575 - -1.0 3,458,575 - +0.1
Or see this region's nucleotide sequence