Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2964

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2963 and Pf6N2E2_2964 overlap by 1 nucleotidesPf6N2E2_2964 and Pf6N2E2_2965 are separated by 36 nucleotidesPf6N2E2_2965 and Pf6N2E2_2966 are separated by 102 nucleotides Pf6N2E2_2963 - FIG003033: Helicase domain protein, at 3,454,473 to 3,456,959 _2963 Pf6N2E2_2964 - FIG006285: ICC-like protein phosphoesterase, at 3,456,959 to 3,457,615 _2964 Pf6N2E2_2965 - FIG00955308: hypothetical protein, at 3,457,652 to 3,457,858 _2965 Pf6N2E2_2966 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 3,457,961 to 3,458,527 _2966 Position (kb) 3456 3457 3458Strain fitness (log2 ratio) -1 0 1at 3456.099 kb on + strand, within Pf6N2E2_2963at 3456.099 kb on + strand, within Pf6N2E2_2963at 3456.100 kb on - strand, within Pf6N2E2_2963at 3456.100 kb on - strand, within Pf6N2E2_2963at 3456.100 kb on - strand, within Pf6N2E2_2963at 3456.100 kb on - strand, within Pf6N2E2_2963at 3456.100 kb on - strand, within Pf6N2E2_2963at 3456.100 kb on - strand, within Pf6N2E2_2963at 3456.544 kb on + strand, within Pf6N2E2_2963at 3456.544 kb on + strand, within Pf6N2E2_2963at 3456.545 kb on - strand, within Pf6N2E2_2963at 3456.699 kb on + strand, within Pf6N2E2_2963at 3456.797 kb on + strandat 3456.797 kb on + strandat 3456.798 kb on - strandat 3456.798 kb on - strandat 3456.971 kb on + strandat 3457.026 kb on - strand, within Pf6N2E2_2964at 3457.026 kb on - strand, within Pf6N2E2_2964at 3457.086 kb on - strand, within Pf6N2E2_2964at 3457.442 kb on + strand, within Pf6N2E2_2964at 3457.443 kb on - strand, within Pf6N2E2_2964at 3457.600 kb on - strandat 3457.600 kb on - strandat 3457.690 kb on + strand, within Pf6N2E2_2965at 3457.690 kb on + strand, within Pf6N2E2_2965at 3457.690 kb on + strand, within Pf6N2E2_2965at 3457.690 kb on + strand, within Pf6N2E2_2965at 3457.691 kb on - strand, within Pf6N2E2_2965at 3457.691 kb on - strand, within Pf6N2E2_2965at 3457.858 kb on + strandat 3457.859 kb on - strandat 3457.859 kb on - strandat 3457.859 kb on - strandat 3457.919 kb on + strandat 3457.919 kb on + strandat 3457.919 kb on + strandat 3457.919 kb on + strandat 3457.919 kb on + strandat 3457.920 kb on - strandat 3457.920 kb on - strandat 3457.920 kb on - strandat 3457.920 kb on - strandat 3457.920 kb on - strandat 3457.920 kb on - strandat 3457.920 kb on - strandat 3458.575 kb on - strandat 3458.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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3,456,099 + Pf6N2E2_2963 0.65 +0.2
3,456,099 + Pf6N2E2_2963 0.65 +0.1
3,456,100 - Pf6N2E2_2963 0.65 -0.1
3,456,100 - Pf6N2E2_2963 0.65 +0.2
3,456,100 - Pf6N2E2_2963 0.65 -0.5
3,456,100 - Pf6N2E2_2963 0.65 -0.0
3,456,100 - Pf6N2E2_2963 0.65 -0.5
3,456,100 - Pf6N2E2_2963 0.65 +0.4
3,456,544 + Pf6N2E2_2963 0.83 +0.0
3,456,544 + Pf6N2E2_2963 0.83 -0.8
3,456,545 - Pf6N2E2_2963 0.83 +0.5
3,456,699 + Pf6N2E2_2963 0.90 +0.6
3,456,797 + +0.2
3,456,797 + +0.1
3,456,798 - +0.4
3,456,798 - +0.0
3,456,971 + +0.2
3,457,026 - Pf6N2E2_2964 0.10 +1.2
3,457,026 - Pf6N2E2_2964 0.10 -1.0
3,457,086 - Pf6N2E2_2964 0.19 -0.5
3,457,442 + Pf6N2E2_2964 0.74 -0.9
3,457,443 - Pf6N2E2_2964 0.74 -0.7
3,457,600 - +1.6
3,457,600 - -0.8
3,457,690 + Pf6N2E2_2965 0.18 +0.2
3,457,690 + Pf6N2E2_2965 0.18 -0.4
3,457,690 + Pf6N2E2_2965 0.18 +0.1
3,457,690 + Pf6N2E2_2965 0.18 -0.1
3,457,691 - Pf6N2E2_2965 0.19 +0.4
3,457,691 - Pf6N2E2_2965 0.19 -0.7
3,457,858 + -0.0
3,457,859 - +0.7
3,457,859 - +0.2
3,457,859 - +0.0
3,457,919 + +0.0
3,457,919 + -0.2
3,457,919 + -0.1
3,457,919 + -0.2
3,457,919 + -0.5
3,457,920 - -0.2
3,457,920 - -0.7
3,457,920 - -0.4
3,457,920 - +0.5
3,457,920 - +0.6
3,457,920 - -0.4
3,457,920 - -1.4
3,458,575 - -1.0
3,458,575 - +0.1

Or see this region's nucleotide sequence