Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2824

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2823 and Pf6N2E2_2824 are separated by 3 nucleotidesPf6N2E2_2824 and Pf6N2E2_2825 overlap by 4 nucleotides Pf6N2E2_2823 - Multidrug efflux RND membrane fusion protein MexC, at 3,309,527 to 3,310,684 _2823 Pf6N2E2_2824 - RND efflux system, inner membrane transporter CmeB, at 3,310,688 to 3,313,852 _2824 Pf6N2E2_2825 - RND efflux system, outer membrane lipoprotein CmeC, at 3,313,849 to 3,315,306 _2825 Position (kb) 3310 3311 3312 3313 3314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3309.797 kb on + strand, within Pf6N2E2_2823at 3309.818 kb on + strand, within Pf6N2E2_2823at 3309.818 kb on + strand, within Pf6N2E2_2823at 3309.819 kb on - strand, within Pf6N2E2_2823at 3309.924 kb on - strand, within Pf6N2E2_2823at 3309.992 kb on + strand, within Pf6N2E2_2823at 3309.993 kb on - strand, within Pf6N2E2_2823at 3310.004 kb on + strand, within Pf6N2E2_2823at 3310.112 kb on + strand, within Pf6N2E2_2823at 3310.113 kb on - strand, within Pf6N2E2_2823at 3310.113 kb on - strand, within Pf6N2E2_2823at 3310.238 kb on + strand, within Pf6N2E2_2823at 3310.657 kb on + strandat 3310.658 kb on - strandat 3310.916 kb on + strandat 3310.917 kb on - strandat 3310.920 kb on + strandat 3310.920 kb on + strandat 3310.920 kb on + strandat 3310.921 kb on - strandat 3310.934 kb on - strandat 3311.156 kb on + strand, within Pf6N2E2_2824at 3311.156 kb on + strand, within Pf6N2E2_2824at 3311.156 kb on + strand, within Pf6N2E2_2824at 3311.232 kb on - strand, within Pf6N2E2_2824at 3311.386 kb on + strand, within Pf6N2E2_2824at 3311.387 kb on - strand, within Pf6N2E2_2824at 3311.387 kb on - strand, within Pf6N2E2_2824at 3311.387 kb on - strand, within Pf6N2E2_2824at 3311.510 kb on + strand, within Pf6N2E2_2824at 3311.510 kb on + strand, within Pf6N2E2_2824at 3311.510 kb on + strand, within Pf6N2E2_2824at 3311.511 kb on - strand, within Pf6N2E2_2824at 3311.511 kb on - strand, within Pf6N2E2_2824at 3311.748 kb on + strand, within Pf6N2E2_2824at 3311.811 kb on + strand, within Pf6N2E2_2824at 3311.812 kb on - strand, within Pf6N2E2_2824at 3312.030 kb on + strand, within Pf6N2E2_2824at 3312.030 kb on + strand, within Pf6N2E2_2824at 3312.031 kb on - strand, within Pf6N2E2_2824at 3312.031 kb on - strand, within Pf6N2E2_2824at 3312.086 kb on + strand, within Pf6N2E2_2824at 3312.086 kb on + strand, within Pf6N2E2_2824at 3312.087 kb on - strand, within Pf6N2E2_2824at 3312.087 kb on - strand, within Pf6N2E2_2824at 3312.309 kb on - strand, within Pf6N2E2_2824at 3312.320 kb on + strand, within Pf6N2E2_2824at 3312.320 kb on + strand, within Pf6N2E2_2824at 3312.320 kb on + strand, within Pf6N2E2_2824at 3312.320 kb on + strand, within Pf6N2E2_2824at 3312.321 kb on - strand, within Pf6N2E2_2824at 3312.414 kb on + strand, within Pf6N2E2_2824at 3312.744 kb on + strand, within Pf6N2E2_2824at 3312.843 kb on + strand, within Pf6N2E2_2824at 3312.843 kb on + strand, within Pf6N2E2_2824at 3312.843 kb on + strand, within Pf6N2E2_2824at 3312.964 kb on + strand, within Pf6N2E2_2824at 3312.964 kb on + strand, within Pf6N2E2_2824at 3312.968 kb on + strand, within Pf6N2E2_2824at 3312.968 kb on + strand, within Pf6N2E2_2824at 3312.968 kb on + strand, within Pf6N2E2_2824at 3312.968 kb on + strand, within Pf6N2E2_2824at 3312.969 kb on - strand, within Pf6N2E2_2824at 3312.969 kb on - strand, within Pf6N2E2_2824at 3313.010 kb on + strand, within Pf6N2E2_2824at 3313.010 kb on + strand, within Pf6N2E2_2824at 3313.010 kb on + strand, within Pf6N2E2_2824at 3313.011 kb on - strand, within Pf6N2E2_2824at 3313.064 kb on + strand, within Pf6N2E2_2824at 3313.065 kb on - strand, within Pf6N2E2_2824at 3313.065 kb on - strand, within Pf6N2E2_2824at 3313.287 kb on - strand, within Pf6N2E2_2824at 3313.370 kb on + strand, within Pf6N2E2_2824at 3313.472 kb on + strand, within Pf6N2E2_2824at 3313.472 kb on + strand, within Pf6N2E2_2824at 3313.472 kb on + strand, within Pf6N2E2_2824at 3313.597 kb on + strandat 3313.598 kb on - strandat 3314.113 kb on + strand, within Pf6N2E2_2825at 3314.114 kb on - strand, within Pf6N2E2_2825at 3314.125 kb on + strand, within Pf6N2E2_2825at 3314.266 kb on + strand, within Pf6N2E2_2825at 3314.324 kb on - strand, within Pf6N2E2_2825at 3314.389 kb on + strand, within Pf6N2E2_2825at 3314.449 kb on + strand, within Pf6N2E2_2825

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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3,309,797 + Pf6N2E2_2823 0.23 -2.2
3,309,818 + Pf6N2E2_2823 0.25 -2.2
3,309,818 + Pf6N2E2_2823 0.25 -1.5
3,309,819 - Pf6N2E2_2823 0.25 -1.5
3,309,924 - Pf6N2E2_2823 0.34 -1.1
3,309,992 + Pf6N2E2_2823 0.40 -3.4
3,309,993 - Pf6N2E2_2823 0.40 -2.3
3,310,004 + Pf6N2E2_2823 0.41 -3.2
3,310,112 + Pf6N2E2_2823 0.51 -2.6
3,310,113 - Pf6N2E2_2823 0.51 -0.6
3,310,113 - Pf6N2E2_2823 0.51 -1.6
3,310,238 + Pf6N2E2_2823 0.61 -1.9
3,310,657 + -1.5
3,310,658 - -2.5
3,310,916 + -3.8
3,310,917 - -3.3
3,310,920 + -2.9
3,310,920 + -3.0
3,310,920 + -0.6
3,310,921 - -2.5
3,310,934 - -2.1
3,311,156 + Pf6N2E2_2824 0.15 -1.6
3,311,156 + Pf6N2E2_2824 0.15 -3.6
3,311,156 + Pf6N2E2_2824 0.15 -1.9
3,311,232 - Pf6N2E2_2824 0.17 -3.1
3,311,386 + Pf6N2E2_2824 0.22 -2.6
3,311,387 - Pf6N2E2_2824 0.22 -0.9
3,311,387 - Pf6N2E2_2824 0.22 -1.9
3,311,387 - Pf6N2E2_2824 0.22 -3.3
3,311,510 + Pf6N2E2_2824 0.26 -0.3
3,311,510 + Pf6N2E2_2824 0.26 -1.6
3,311,510 + Pf6N2E2_2824 0.26 -3.1
3,311,511 - Pf6N2E2_2824 0.26 -1.5
3,311,511 - Pf6N2E2_2824 0.26 -1.4
3,311,748 + Pf6N2E2_2824 0.33 -0.1
3,311,811 + Pf6N2E2_2824 0.35 -1.4
3,311,812 - Pf6N2E2_2824 0.36 -0.4
3,312,030 + Pf6N2E2_2824 0.42 -0.3
3,312,030 + Pf6N2E2_2824 0.42 -0.6
3,312,031 - Pf6N2E2_2824 0.42 -1.6
3,312,031 - Pf6N2E2_2824 0.42 -2.1
3,312,086 + Pf6N2E2_2824 0.44 -0.1
3,312,086 + Pf6N2E2_2824 0.44 -3.5
3,312,087 - Pf6N2E2_2824 0.44 -1.7
3,312,087 - Pf6N2E2_2824 0.44 -2.6
3,312,309 - Pf6N2E2_2824 0.51 -3.3
3,312,320 + Pf6N2E2_2824 0.52 -2.6
3,312,320 + Pf6N2E2_2824 0.52 -2.8
3,312,320 + Pf6N2E2_2824 0.52 -2.0
3,312,320 + Pf6N2E2_2824 0.52 -2.6
3,312,321 - Pf6N2E2_2824 0.52 -4.6
3,312,414 + Pf6N2E2_2824 0.55 -2.4
3,312,744 + Pf6N2E2_2824 0.65 -1.8
3,312,843 + Pf6N2E2_2824 0.68 -2.9
3,312,843 + Pf6N2E2_2824 0.68 -2.6
3,312,843 + Pf6N2E2_2824 0.68 -2.3
3,312,964 + Pf6N2E2_2824 0.72 -2.5
3,312,964 + Pf6N2E2_2824 0.72 -2.5
3,312,968 + Pf6N2E2_2824 0.72 -2.1
3,312,968 + Pf6N2E2_2824 0.72 -3.3
3,312,968 + Pf6N2E2_2824 0.72 -3.5
3,312,968 + Pf6N2E2_2824 0.72 -3.2
3,312,969 - Pf6N2E2_2824 0.72 -2.5
3,312,969 - Pf6N2E2_2824 0.72 -1.4
3,313,010 + Pf6N2E2_2824 0.73 -2.6
3,313,010 + Pf6N2E2_2824 0.73 -2.2
3,313,010 + Pf6N2E2_2824 0.73 -3.1
3,313,011 - Pf6N2E2_2824 0.73 -3.0
3,313,064 + Pf6N2E2_2824 0.75 -2.8
3,313,065 - Pf6N2E2_2824 0.75 -2.8
3,313,065 - Pf6N2E2_2824 0.75 -2.1
3,313,287 - Pf6N2E2_2824 0.82 -2.2
3,313,370 + Pf6N2E2_2824 0.85 -2.5
3,313,472 + Pf6N2E2_2824 0.88 -3.2
3,313,472 + Pf6N2E2_2824 0.88 -1.6
3,313,472 + Pf6N2E2_2824 0.88 -0.6
3,313,597 + -2.4
3,313,598 - +0.9
3,314,113 + Pf6N2E2_2825 0.18 -1.4
3,314,114 - Pf6N2E2_2825 0.18 -1.9
3,314,125 + Pf6N2E2_2825 0.19 +0.9
3,314,266 + Pf6N2E2_2825 0.29 -2.8
3,314,324 - Pf6N2E2_2825 0.33 -0.6
3,314,389 + Pf6N2E2_2825 0.37 -1.1
3,314,449 + Pf6N2E2_2825 0.41 -0.6

Or see this region's nucleotide sequence