Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2823 and Pf6N2E2_2824 are separated by 3 nucleotides Pf6N2E2_2824 and Pf6N2E2_2825 overlap by 4 nucleotides
Pf6N2E2_2823 - Multidrug efflux RND membrane fusion protein MexC, at 3,309,527 to 3,310,684
_2823
Pf6N2E2_2824 - RND efflux system, inner membrane transporter CmeB, at 3,310,688 to 3,313,852
_2824
Pf6N2E2_2825 - RND efflux system, outer membrane lipoprotein CmeC, at 3,313,849 to 3,315,306
_2825
Position (kb)
3310
3311
3312
3313
3314 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3309.797 kb on + strand, within Pf6N2E2_2823 at 3309.818 kb on + strand, within Pf6N2E2_2823 at 3309.818 kb on + strand, within Pf6N2E2_2823 at 3309.819 kb on - strand, within Pf6N2E2_2823 at 3309.924 kb on - strand, within Pf6N2E2_2823 at 3309.992 kb on + strand, within Pf6N2E2_2823 at 3309.993 kb on - strand, within Pf6N2E2_2823 at 3310.004 kb on + strand, within Pf6N2E2_2823 at 3310.112 kb on + strand, within Pf6N2E2_2823 at 3310.113 kb on - strand, within Pf6N2E2_2823 at 3310.113 kb on - strand, within Pf6N2E2_2823 at 3310.238 kb on + strand, within Pf6N2E2_2823 at 3310.657 kb on + strand at 3310.658 kb on - strand at 3310.916 kb on + strand at 3310.917 kb on - strand at 3310.920 kb on + strand at 3310.920 kb on + strand at 3310.920 kb on + strand at 3310.921 kb on - strand at 3310.934 kb on - strand at 3311.156 kb on + strand, within Pf6N2E2_2824 at 3311.156 kb on + strand, within Pf6N2E2_2824 at 3311.156 kb on + strand, within Pf6N2E2_2824 at 3311.232 kb on - strand, within Pf6N2E2_2824 at 3311.386 kb on + strand, within Pf6N2E2_2824 at 3311.387 kb on - strand, within Pf6N2E2_2824 at 3311.387 kb on - strand, within Pf6N2E2_2824 at 3311.387 kb on - strand, within Pf6N2E2_2824 at 3311.510 kb on + strand, within Pf6N2E2_2824 at 3311.510 kb on + strand, within Pf6N2E2_2824 at 3311.510 kb on + strand, within Pf6N2E2_2824 at 3311.511 kb on - strand, within Pf6N2E2_2824 at 3311.511 kb on - strand, within Pf6N2E2_2824 at 3311.748 kb on + strand, within Pf6N2E2_2824 at 3311.811 kb on + strand, within Pf6N2E2_2824 at 3311.812 kb on - strand, within Pf6N2E2_2824 at 3312.030 kb on + strand, within Pf6N2E2_2824 at 3312.030 kb on + strand, within Pf6N2E2_2824 at 3312.031 kb on - strand, within Pf6N2E2_2824 at 3312.031 kb on - strand, within Pf6N2E2_2824 at 3312.086 kb on + strand, within Pf6N2E2_2824 at 3312.086 kb on + strand, within Pf6N2E2_2824 at 3312.087 kb on - strand, within Pf6N2E2_2824 at 3312.087 kb on - strand, within Pf6N2E2_2824 at 3312.309 kb on - strand, within Pf6N2E2_2824 at 3312.320 kb on + strand, within Pf6N2E2_2824 at 3312.320 kb on + strand, within Pf6N2E2_2824 at 3312.320 kb on + strand, within Pf6N2E2_2824 at 3312.320 kb on + strand, within Pf6N2E2_2824 at 3312.321 kb on - strand, within Pf6N2E2_2824 at 3312.414 kb on + strand, within Pf6N2E2_2824 at 3312.744 kb on + strand, within Pf6N2E2_2824 at 3312.843 kb on + strand, within Pf6N2E2_2824 at 3312.843 kb on + strand, within Pf6N2E2_2824 at 3312.843 kb on + strand, within Pf6N2E2_2824 at 3312.964 kb on + strand, within Pf6N2E2_2824 at 3312.964 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.968 kb on + strand, within Pf6N2E2_2824 at 3312.969 kb on - strand, within Pf6N2E2_2824 at 3312.969 kb on - strand, within Pf6N2E2_2824 at 3313.010 kb on + strand, within Pf6N2E2_2824 at 3313.010 kb on + strand, within Pf6N2E2_2824 at 3313.010 kb on + strand, within Pf6N2E2_2824 at 3313.011 kb on - strand, within Pf6N2E2_2824 at 3313.064 kb on + strand, within Pf6N2E2_2824 at 3313.065 kb on - strand, within Pf6N2E2_2824 at 3313.065 kb on - strand, within Pf6N2E2_2824 at 3313.287 kb on - strand, within Pf6N2E2_2824 at 3313.370 kb on + strand, within Pf6N2E2_2824 at 3313.472 kb on + strand, within Pf6N2E2_2824 at 3313.472 kb on + strand, within Pf6N2E2_2824 at 3313.472 kb on + strand, within Pf6N2E2_2824 at 3313.597 kb on + strand at 3313.598 kb on - strand at 3314.113 kb on + strand, within Pf6N2E2_2825 at 3314.114 kb on - strand, within Pf6N2E2_2825 at 3314.125 kb on + strand, within Pf6N2E2_2825 at 3314.266 kb on + strand, within Pf6N2E2_2825 at 3314.324 kb on - strand, within Pf6N2E2_2825 at 3314.389 kb on + strand, within Pf6N2E2_2825 at 3314.449 kb on + strand, within Pf6N2E2_2825
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 3,309,797 + Pf6N2E2_2823 0.23 -2.2 3,309,818 + Pf6N2E2_2823 0.25 -2.2 3,309,818 + Pf6N2E2_2823 0.25 -1.5 3,309,819 - Pf6N2E2_2823 0.25 -1.5 3,309,924 - Pf6N2E2_2823 0.34 -1.1 3,309,992 + Pf6N2E2_2823 0.40 -3.4 3,309,993 - Pf6N2E2_2823 0.40 -2.3 3,310,004 + Pf6N2E2_2823 0.41 -3.2 3,310,112 + Pf6N2E2_2823 0.51 -2.6 3,310,113 - Pf6N2E2_2823 0.51 -0.6 3,310,113 - Pf6N2E2_2823 0.51 -1.6 3,310,238 + Pf6N2E2_2823 0.61 -1.9 3,310,657 + -1.5 3,310,658 - -2.5 3,310,916 + -3.8 3,310,917 - -3.3 3,310,920 + -2.9 3,310,920 + -3.0 3,310,920 + -0.6 3,310,921 - -2.5 3,310,934 - -2.1 3,311,156 + Pf6N2E2_2824 0.15 -1.6 3,311,156 + Pf6N2E2_2824 0.15 -3.6 3,311,156 + Pf6N2E2_2824 0.15 -1.9 3,311,232 - Pf6N2E2_2824 0.17 -3.1 3,311,386 + Pf6N2E2_2824 0.22 -2.6 3,311,387 - Pf6N2E2_2824 0.22 -0.9 3,311,387 - Pf6N2E2_2824 0.22 -1.9 3,311,387 - Pf6N2E2_2824 0.22 -3.3 3,311,510 + Pf6N2E2_2824 0.26 -0.3 3,311,510 + Pf6N2E2_2824 0.26 -1.6 3,311,510 + Pf6N2E2_2824 0.26 -3.1 3,311,511 - Pf6N2E2_2824 0.26 -1.5 3,311,511 - Pf6N2E2_2824 0.26 -1.4 3,311,748 + Pf6N2E2_2824 0.33 -0.1 3,311,811 + Pf6N2E2_2824 0.35 -1.4 3,311,812 - Pf6N2E2_2824 0.36 -0.4 3,312,030 + Pf6N2E2_2824 0.42 -0.3 3,312,030 + Pf6N2E2_2824 0.42 -0.6 3,312,031 - Pf6N2E2_2824 0.42 -1.6 3,312,031 - Pf6N2E2_2824 0.42 -2.1 3,312,086 + Pf6N2E2_2824 0.44 -0.1 3,312,086 + Pf6N2E2_2824 0.44 -3.5 3,312,087 - Pf6N2E2_2824 0.44 -1.7 3,312,087 - Pf6N2E2_2824 0.44 -2.6 3,312,309 - Pf6N2E2_2824 0.51 -3.3 3,312,320 + Pf6N2E2_2824 0.52 -2.6 3,312,320 + Pf6N2E2_2824 0.52 -2.8 3,312,320 + Pf6N2E2_2824 0.52 -2.0 3,312,320 + Pf6N2E2_2824 0.52 -2.6 3,312,321 - Pf6N2E2_2824 0.52 -4.6 3,312,414 + Pf6N2E2_2824 0.55 -2.4 3,312,744 + Pf6N2E2_2824 0.65 -1.8 3,312,843 + Pf6N2E2_2824 0.68 -2.9 3,312,843 + Pf6N2E2_2824 0.68 -2.6 3,312,843 + Pf6N2E2_2824 0.68 -2.3 3,312,964 + Pf6N2E2_2824 0.72 -2.5 3,312,964 + Pf6N2E2_2824 0.72 -2.5 3,312,968 + Pf6N2E2_2824 0.72 -2.1 3,312,968 + Pf6N2E2_2824 0.72 -3.3 3,312,968 + Pf6N2E2_2824 0.72 -3.5 3,312,968 + Pf6N2E2_2824 0.72 -3.2 3,312,969 - Pf6N2E2_2824 0.72 -2.5 3,312,969 - Pf6N2E2_2824 0.72 -1.4 3,313,010 + Pf6N2E2_2824 0.73 -2.6 3,313,010 + Pf6N2E2_2824 0.73 -2.2 3,313,010 + Pf6N2E2_2824 0.73 -3.1 3,313,011 - Pf6N2E2_2824 0.73 -3.0 3,313,064 + Pf6N2E2_2824 0.75 -2.8 3,313,065 - Pf6N2E2_2824 0.75 -2.8 3,313,065 - Pf6N2E2_2824 0.75 -2.1 3,313,287 - Pf6N2E2_2824 0.82 -2.2 3,313,370 + Pf6N2E2_2824 0.85 -2.5 3,313,472 + Pf6N2E2_2824 0.88 -3.2 3,313,472 + Pf6N2E2_2824 0.88 -1.6 3,313,472 + Pf6N2E2_2824 0.88 -0.6 3,313,597 + -2.4 3,313,598 - +0.9 3,314,113 + Pf6N2E2_2825 0.18 -1.4 3,314,114 - Pf6N2E2_2825 0.18 -1.9 3,314,125 + Pf6N2E2_2825 0.19 +0.9 3,314,266 + Pf6N2E2_2825 0.29 -2.8 3,314,324 - Pf6N2E2_2825 0.33 -0.6 3,314,389 + Pf6N2E2_2825 0.37 -1.1 3,314,449 + Pf6N2E2_2825 0.41 -0.6
Or see this region's nucleotide sequence