Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2732 and Pf6N2E2_2733 are separated by 3 nucleotides Pf6N2E2_2733 and Pf6N2E2_2734 are separated by 103 nucleotides Pf6N2E2_2734 and Pf6N2E2_2735 are separated by 227 nucleotides
Pf6N2E2_2732 - Transcriptional regulator, LysR family, at 3,223,987 to 3,224,919
_2732
Pf6N2E2_2733 - Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase, at 3,224,923 to 3,225,288
_2733
Pf6N2E2_2734 - Transcriptional regulator, LysR family, at 3,225,392 to 3,226,315
_2734
Pf6N2E2_2735 - hypothetical protein, at 3,226,543 to 3,228,630
_2735
Position (kb)
3225
3226
3227 Strain fitness (log2 ratio)
-1
0
1 at 3224.692 kb on + strand, within Pf6N2E2_2732 at 3224.692 kb on + strand, within Pf6N2E2_2732 at 3224.693 kb on - strand, within Pf6N2E2_2732 at 3224.693 kb on - strand, within Pf6N2E2_2732 at 3224.693 kb on - strand, within Pf6N2E2_2732 at 3224.693 kb on - strand, within Pf6N2E2_2732 at 3224.949 kb on - strand at 3225.266 kb on + strand at 3225.266 kb on + strand at 3225.266 kb on + strand at 3225.266 kb on + strand at 3225.267 kb on - strand at 3225.267 kb on - strand at 3225.267 kb on - strand at 3225.311 kb on + strand at 3225.312 kb on - strand at 3225.342 kb on + strand at 3225.353 kb on + strand at 3225.401 kb on + strand at 3225.401 kb on + strand at 3225.572 kb on - strand, within Pf6N2E2_2734 at 3225.573 kb on + strand, within Pf6N2E2_2734 at 3225.574 kb on - strand, within Pf6N2E2_2734 at 3225.744 kb on + strand, within Pf6N2E2_2734 at 3225.745 kb on - strand, within Pf6N2E2_2734 at 3226.349 kb on + strand at 3226.349 kb on + strand at 3226.349 kb on + strand at 3226.349 kb on + strand at 3226.350 kb on - strand at 3226.373 kb on + strand at 3226.403 kb on + strand at 3226.403 kb on + strand at 3226.403 kb on + strand at 3226.403 kb on + strand at 3226.545 kb on - strand at 3226.782 kb on + strand, within Pf6N2E2_2735 at 3226.783 kb on - strand, within Pf6N2E2_2735 at 3227.120 kb on + strand, within Pf6N2E2_2735 at 3227.121 kb on - strand, within Pf6N2E2_2735 at 3227.121 kb on - strand, within Pf6N2E2_2735 at 3227.121 kb on - strand, within Pf6N2E2_2735 at 3227.138 kb on + strand, within Pf6N2E2_2735 at 3227.138 kb on + strand, within Pf6N2E2_2735 at 3227.139 kb on - strand, within Pf6N2E2_2735 at 3227.213 kb on + strand, within Pf6N2E2_2735 at 3227.214 kb on - strand, within Pf6N2E2_2735 at 3227.214 kb on - strand, within Pf6N2E2_2735 at 3227.249 kb on + strand, within Pf6N2E2_2735 at 3227.249 kb on + strand, within Pf6N2E2_2735 at 3227.313 kb on - strand, within Pf6N2E2_2735
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 3,224,692 + Pf6N2E2_2732 0.76 -1.1 3,224,692 + Pf6N2E2_2732 0.76 -1.7 3,224,693 - Pf6N2E2_2732 0.76 -0.4 3,224,693 - Pf6N2E2_2732 0.76 -0.3 3,224,693 - Pf6N2E2_2732 0.76 -1.4 3,224,693 - Pf6N2E2_2732 0.76 -0.7 3,224,949 - +0.5 3,225,266 + +0.3 3,225,266 + +0.7 3,225,266 + -0.6 3,225,266 + -0.8 3,225,267 - -0.9 3,225,267 - +0.1 3,225,267 - +0.2 3,225,311 + +0.8 3,225,312 - -1.0 3,225,342 + +0.1 3,225,353 + +0.4 3,225,401 + +0.0 3,225,401 + -0.7 3,225,572 - Pf6N2E2_2734 0.19 +1.0 3,225,573 + Pf6N2E2_2734 0.20 +0.8 3,225,574 - Pf6N2E2_2734 0.20 +0.4 3,225,744 + Pf6N2E2_2734 0.38 +0.1 3,225,745 - Pf6N2E2_2734 0.38 +0.4 3,226,349 + -0.6 3,226,349 + -0.1 3,226,349 + +0.5 3,226,349 + +0.8 3,226,350 - +0.7 3,226,373 + -0.2 3,226,403 + +1.2 3,226,403 + +0.2 3,226,403 + +0.6 3,226,403 + +0.5 3,226,545 - +0.4 3,226,782 + Pf6N2E2_2735 0.11 -0.3 3,226,783 - Pf6N2E2_2735 0.11 -0.0 3,227,120 + Pf6N2E2_2735 0.28 -0.7 3,227,121 - Pf6N2E2_2735 0.28 +0.2 3,227,121 - Pf6N2E2_2735 0.28 +0.4 3,227,121 - Pf6N2E2_2735 0.28 +0.2 3,227,138 + Pf6N2E2_2735 0.28 +0.3 3,227,138 + Pf6N2E2_2735 0.28 -0.7 3,227,139 - Pf6N2E2_2735 0.29 -1.2 3,227,213 + Pf6N2E2_2735 0.32 +0.3 3,227,214 - Pf6N2E2_2735 0.32 -0.4 3,227,214 - Pf6N2E2_2735 0.32 -1.1 3,227,249 + Pf6N2E2_2735 0.34 +0.1 3,227,249 + Pf6N2E2_2735 0.34 +0.4 3,227,313 - Pf6N2E2_2735 0.37 -0.3
Or see this region's nucleotide sequence