Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2698 and Pf6N2E2_2699 are separated by 338 nucleotides Pf6N2E2_2699 and Pf6N2E2_2700 are separated by 431 nucleotides
Pf6N2E2_2698 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,191,394 to 3,192,257
_2698
Pf6N2E2_2699 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 3,192,596 to 3,193,534
_2699
Pf6N2E2_2700 - Cysteine synthase (EC 2.5.1.47), at 3,193,966 to 3,194,940
_2700
Position (kb)
3192
3193
3194 Strain fitness (log2 ratio)
-2
-1
0
1 at 3191.642 kb on - strand, within Pf6N2E2_2698 at 3191.836 kb on + strand, within Pf6N2E2_2698 at 3191.836 kb on + strand, within Pf6N2E2_2698 at 3191.836 kb on + strand, within Pf6N2E2_2698 at 3191.836 kb on + strand, within Pf6N2E2_2698 at 3191.836 kb on + strand, within Pf6N2E2_2698 at 3191.837 kb on - strand, within Pf6N2E2_2698 at 3191.837 kb on - strand, within Pf6N2E2_2698 at 3192.261 kb on + strand at 3192.270 kb on + strand at 3192.270 kb on + strand at 3192.270 kb on + strand at 3192.271 kb on - strand at 3192.271 kb on - strand at 3192.271 kb on - strand at 3192.271 kb on - strand at 3192.384 kb on - strand at 3192.384 kb on - strand at 3192.393 kb on + strand at 3192.394 kb on - strand at 3192.394 kb on - strand at 3192.406 kb on + strand at 3192.423 kb on + strand at 3192.566 kb on - strand at 3192.586 kb on + strand at 3192.593 kb on + strand at 3192.594 kb on - strand at 3192.598 kb on - strand at 3192.738 kb on + strand, within Pf6N2E2_2699 at 3192.738 kb on + strand, within Pf6N2E2_2699 at 3192.918 kb on + strand, within Pf6N2E2_2699 at 3192.919 kb on - strand, within Pf6N2E2_2699 at 3192.919 kb on - strand, within Pf6N2E2_2699 at 3192.919 kb on - strand, within Pf6N2E2_2699 at 3192.919 kb on - strand, within Pf6N2E2_2699 at 3192.961 kb on - strand, within Pf6N2E2_2699 at 3192.961 kb on - strand, within Pf6N2E2_2699 at 3192.961 kb on - strand, within Pf6N2E2_2699 at 3193.189 kb on - strand, within Pf6N2E2_2699 at 3193.261 kb on - strand, within Pf6N2E2_2699 at 3193.261 kb on - strand, within Pf6N2E2_2699 at 3193.261 kb on - strand, within Pf6N2E2_2699 at 3193.353 kb on + strand, within Pf6N2E2_2699 at 3193.353 kb on + strand, within Pf6N2E2_2699 at 3193.353 kb on + strand, within Pf6N2E2_2699 at 3193.383 kb on + strand, within Pf6N2E2_2699 at 3193.384 kb on - strand, within Pf6N2E2_2699 at 3193.396 kb on + strand, within Pf6N2E2_2699 at 3193.397 kb on - strand, within Pf6N2E2_2699 at 3193.399 kb on - strand, within Pf6N2E2_2699 at 3193.399 kb on - strand, within Pf6N2E2_2699 at 3193.399 kb on - strand, within Pf6N2E2_2699 at 3193.473 kb on + strand at 3193.473 kb on + strand at 3193.575 kb on - strand at 3193.586 kb on + strand at 3193.675 kb on + strand at 3193.675 kb on + strand at 3193.725 kb on + strand at 3193.725 kb on + strand at 3193.726 kb on - strand at 3193.726 kb on - strand at 3193.726 kb on - strand at 3193.726 kb on - strand at 3193.889 kb on + strand at 3193.889 kb on + strand at 3193.890 kb on - strand at 3193.890 kb on - strand at 3194.021 kb on + strand at 3194.021 kb on + strand at 3194.022 kb on - strand at 3194.189 kb on - strand, within Pf6N2E2_2700 at 3194.373 kb on - strand, within Pf6N2E2_2700 at 3194.373 kb on - strand, within Pf6N2E2_2700 at 3194.373 kb on - strand, within Pf6N2E2_2700 at 3194.373 kb on - strand, within Pf6N2E2_2700 at 3194.522 kb on + strand, within Pf6N2E2_2700 at 3194.522 kb on + strand, within Pf6N2E2_2700 at 3194.522 kb on + strand, within Pf6N2E2_2700 at 3194.522 kb on + strand, within Pf6N2E2_2700 at 3194.522 kb on + strand, within Pf6N2E2_2700 at 3194.523 kb on - strand, within Pf6N2E2_2700 at 3194.523 kb on - strand, within Pf6N2E2_2700
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 3,191,642 - Pf6N2E2_2698 0.29 -0.5 3,191,836 + Pf6N2E2_2698 0.51 +0.0 3,191,836 + Pf6N2E2_2698 0.51 +0.5 3,191,836 + Pf6N2E2_2698 0.51 +0.0 3,191,836 + Pf6N2E2_2698 0.51 +0.1 3,191,836 + Pf6N2E2_2698 0.51 -1.9 3,191,837 - Pf6N2E2_2698 0.51 -1.4 3,191,837 - Pf6N2E2_2698 0.51 -0.3 3,192,261 + -0.9 3,192,270 + -0.4 3,192,270 + +1.5 3,192,270 + -1.3 3,192,271 - -0.6 3,192,271 - -1.7 3,192,271 - -0.8 3,192,271 - -0.2 3,192,384 - +0.3 3,192,384 - -1.9 3,192,393 + +1.7 3,192,394 - -0.5 3,192,394 - +0.2 3,192,406 + -0.9 3,192,423 + -0.4 3,192,566 - -0.5 3,192,586 + +0.1 3,192,593 + -0.5 3,192,594 - -0.7 3,192,598 - +1.0 3,192,738 + Pf6N2E2_2699 0.15 -2.0 3,192,738 + Pf6N2E2_2699 0.15 +0.4 3,192,918 + Pf6N2E2_2699 0.34 -0.1 3,192,919 - Pf6N2E2_2699 0.34 -2.2 3,192,919 - Pf6N2E2_2699 0.34 +0.3 3,192,919 - Pf6N2E2_2699 0.34 -0.1 3,192,919 - Pf6N2E2_2699 0.34 -2.2 3,192,961 - Pf6N2E2_2699 0.39 -1.4 3,192,961 - Pf6N2E2_2699 0.39 -1.7 3,192,961 - Pf6N2E2_2699 0.39 -0.5 3,193,189 - Pf6N2E2_2699 0.63 -0.9 3,193,261 - Pf6N2E2_2699 0.71 +0.5 3,193,261 - Pf6N2E2_2699 0.71 -0.6 3,193,261 - Pf6N2E2_2699 0.71 -0.7 3,193,353 + Pf6N2E2_2699 0.81 -0.6 3,193,353 + Pf6N2E2_2699 0.81 -0.4 3,193,353 + Pf6N2E2_2699 0.81 -0.7 3,193,383 + Pf6N2E2_2699 0.84 -0.0 3,193,384 - Pf6N2E2_2699 0.84 -0.6 3,193,396 + Pf6N2E2_2699 0.85 +0.0 3,193,397 - Pf6N2E2_2699 0.85 -1.1 3,193,399 - Pf6N2E2_2699 0.86 +1.0 3,193,399 - Pf6N2E2_2699 0.86 -1.6 3,193,399 - Pf6N2E2_2699 0.86 +1.6 3,193,473 + -1.1 3,193,473 + -0.5 3,193,575 - +0.6 3,193,586 + -0.7 3,193,675 + -1.0 3,193,675 + -0.4 3,193,725 + +0.6 3,193,725 + -0.5 3,193,726 - +0.1 3,193,726 - +0.7 3,193,726 - +1.2 3,193,726 - +0.4 3,193,889 + -0.3 3,193,889 + +1.2 3,193,890 - -0.3 3,193,890 - -0.1 3,194,021 + -0.1 3,194,021 + -1.6 3,194,022 - +0.3 3,194,189 - Pf6N2E2_2700 0.23 +0.9 3,194,373 - Pf6N2E2_2700 0.42 +0.3 3,194,373 - Pf6N2E2_2700 0.42 +0.4 3,194,373 - Pf6N2E2_2700 0.42 -0.2 3,194,373 - Pf6N2E2_2700 0.42 +1.1 3,194,522 + Pf6N2E2_2700 0.57 -0.0 3,194,522 + Pf6N2E2_2700 0.57 +0.5 3,194,522 + Pf6N2E2_2700 0.57 +0.1 3,194,522 + Pf6N2E2_2700 0.57 -0.2 3,194,522 + Pf6N2E2_2700 0.57 -0.0 3,194,523 - Pf6N2E2_2700 0.57 +0.3 3,194,523 - Pf6N2E2_2700 0.57 +0.7
Or see this region's nucleotide sequence