Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2699

Experiment: Benzethonium chloride 0.02 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2698 and Pf6N2E2_2699 are separated by 338 nucleotidesPf6N2E2_2699 and Pf6N2E2_2700 are separated by 431 nucleotides Pf6N2E2_2698 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,191,394 to 3,192,257 _2698 Pf6N2E2_2699 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 3,192,596 to 3,193,534 _2699 Pf6N2E2_2700 - Cysteine synthase (EC 2.5.1.47), at 3,193,966 to 3,194,940 _2700 Position (kb) 3192 3193 3194Strain fitness (log2 ratio) -2 -1 0 1at 3191.642 kb on - strand, within Pf6N2E2_2698at 3191.836 kb on + strand, within Pf6N2E2_2698at 3191.836 kb on + strand, within Pf6N2E2_2698at 3191.836 kb on + strand, within Pf6N2E2_2698at 3191.836 kb on + strand, within Pf6N2E2_2698at 3191.836 kb on + strand, within Pf6N2E2_2698at 3191.837 kb on - strand, within Pf6N2E2_2698at 3191.837 kb on - strand, within Pf6N2E2_2698at 3192.261 kb on + strandat 3192.270 kb on + strandat 3192.270 kb on + strandat 3192.270 kb on + strandat 3192.271 kb on - strandat 3192.271 kb on - strandat 3192.271 kb on - strandat 3192.271 kb on - strandat 3192.384 kb on - strandat 3192.384 kb on - strandat 3192.393 kb on + strandat 3192.394 kb on - strandat 3192.394 kb on - strandat 3192.406 kb on + strandat 3192.423 kb on + strandat 3192.566 kb on - strandat 3192.586 kb on + strandat 3192.593 kb on + strandat 3192.594 kb on - strandat 3192.598 kb on - strandat 3192.738 kb on + strand, within Pf6N2E2_2699at 3192.738 kb on + strand, within Pf6N2E2_2699at 3192.918 kb on + strand, within Pf6N2E2_2699at 3192.919 kb on - strand, within Pf6N2E2_2699at 3192.919 kb on - strand, within Pf6N2E2_2699at 3192.919 kb on - strand, within Pf6N2E2_2699at 3192.919 kb on - strand, within Pf6N2E2_2699at 3192.961 kb on - strand, within Pf6N2E2_2699at 3192.961 kb on - strand, within Pf6N2E2_2699at 3192.961 kb on - strand, within Pf6N2E2_2699at 3193.189 kb on - strand, within Pf6N2E2_2699at 3193.261 kb on - strand, within Pf6N2E2_2699at 3193.261 kb on - strand, within Pf6N2E2_2699at 3193.261 kb on - strand, within Pf6N2E2_2699at 3193.353 kb on + strand, within Pf6N2E2_2699at 3193.353 kb on + strand, within Pf6N2E2_2699at 3193.353 kb on + strand, within Pf6N2E2_2699at 3193.383 kb on + strand, within Pf6N2E2_2699at 3193.384 kb on - strand, within Pf6N2E2_2699at 3193.396 kb on + strand, within Pf6N2E2_2699at 3193.397 kb on - strand, within Pf6N2E2_2699at 3193.399 kb on - strand, within Pf6N2E2_2699at 3193.399 kb on - strand, within Pf6N2E2_2699at 3193.399 kb on - strand, within Pf6N2E2_2699at 3193.473 kb on + strandat 3193.473 kb on + strandat 3193.575 kb on - strandat 3193.586 kb on + strandat 3193.675 kb on + strandat 3193.675 kb on + strandat 3193.725 kb on + strandat 3193.725 kb on + strandat 3193.726 kb on - strandat 3193.726 kb on - strandat 3193.726 kb on - strandat 3193.726 kb on - strandat 3193.889 kb on + strandat 3193.889 kb on + strandat 3193.890 kb on - strandat 3193.890 kb on - strandat 3194.021 kb on + strandat 3194.021 kb on + strandat 3194.022 kb on - strandat 3194.189 kb on - strand, within Pf6N2E2_2700at 3194.373 kb on - strand, within Pf6N2E2_2700at 3194.373 kb on - strand, within Pf6N2E2_2700at 3194.373 kb on - strand, within Pf6N2E2_2700at 3194.373 kb on - strand, within Pf6N2E2_2700at 3194.522 kb on + strand, within Pf6N2E2_2700at 3194.522 kb on + strand, within Pf6N2E2_2700at 3194.522 kb on + strand, within Pf6N2E2_2700at 3194.522 kb on + strand, within Pf6N2E2_2700at 3194.522 kb on + strand, within Pf6N2E2_2700at 3194.523 kb on - strand, within Pf6N2E2_2700at 3194.523 kb on - strand, within Pf6N2E2_2700

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
remove
3,191,642 - Pf6N2E2_2698 0.29 -0.5
3,191,836 + Pf6N2E2_2698 0.51 +0.0
3,191,836 + Pf6N2E2_2698 0.51 +0.5
3,191,836 + Pf6N2E2_2698 0.51 +0.0
3,191,836 + Pf6N2E2_2698 0.51 +0.1
3,191,836 + Pf6N2E2_2698 0.51 -1.9
3,191,837 - Pf6N2E2_2698 0.51 -1.4
3,191,837 - Pf6N2E2_2698 0.51 -0.3
3,192,261 + -0.9
3,192,270 + -0.4
3,192,270 + +1.5
3,192,270 + -1.3
3,192,271 - -0.6
3,192,271 - -1.7
3,192,271 - -0.8
3,192,271 - -0.2
3,192,384 - +0.3
3,192,384 - -1.9
3,192,393 + +1.7
3,192,394 - -0.5
3,192,394 - +0.2
3,192,406 + -0.9
3,192,423 + -0.4
3,192,566 - -0.5
3,192,586 + +0.1
3,192,593 + -0.5
3,192,594 - -0.7
3,192,598 - +1.0
3,192,738 + Pf6N2E2_2699 0.15 -2.0
3,192,738 + Pf6N2E2_2699 0.15 +0.4
3,192,918 + Pf6N2E2_2699 0.34 -0.1
3,192,919 - Pf6N2E2_2699 0.34 -2.2
3,192,919 - Pf6N2E2_2699 0.34 +0.3
3,192,919 - Pf6N2E2_2699 0.34 -0.1
3,192,919 - Pf6N2E2_2699 0.34 -2.2
3,192,961 - Pf6N2E2_2699 0.39 -1.4
3,192,961 - Pf6N2E2_2699 0.39 -1.7
3,192,961 - Pf6N2E2_2699 0.39 -0.5
3,193,189 - Pf6N2E2_2699 0.63 -0.9
3,193,261 - Pf6N2E2_2699 0.71 +0.5
3,193,261 - Pf6N2E2_2699 0.71 -0.6
3,193,261 - Pf6N2E2_2699 0.71 -0.7
3,193,353 + Pf6N2E2_2699 0.81 -0.6
3,193,353 + Pf6N2E2_2699 0.81 -0.4
3,193,353 + Pf6N2E2_2699 0.81 -0.7
3,193,383 + Pf6N2E2_2699 0.84 -0.0
3,193,384 - Pf6N2E2_2699 0.84 -0.6
3,193,396 + Pf6N2E2_2699 0.85 +0.0
3,193,397 - Pf6N2E2_2699 0.85 -1.1
3,193,399 - Pf6N2E2_2699 0.86 +1.0
3,193,399 - Pf6N2E2_2699 0.86 -1.6
3,193,399 - Pf6N2E2_2699 0.86 +1.6
3,193,473 + -1.1
3,193,473 + -0.5
3,193,575 - +0.6
3,193,586 + -0.7
3,193,675 + -1.0
3,193,675 + -0.4
3,193,725 + +0.6
3,193,725 + -0.5
3,193,726 - +0.1
3,193,726 - +0.7
3,193,726 - +1.2
3,193,726 - +0.4
3,193,889 + -0.3
3,193,889 + +1.2
3,193,890 - -0.3
3,193,890 - -0.1
3,194,021 + -0.1
3,194,021 + -1.6
3,194,022 - +0.3
3,194,189 - Pf6N2E2_2700 0.23 +0.9
3,194,373 - Pf6N2E2_2700 0.42 +0.3
3,194,373 - Pf6N2E2_2700 0.42 +0.4
3,194,373 - Pf6N2E2_2700 0.42 -0.2
3,194,373 - Pf6N2E2_2700 0.42 +1.1
3,194,522 + Pf6N2E2_2700 0.57 -0.0
3,194,522 + Pf6N2E2_2700 0.57 +0.5
3,194,522 + Pf6N2E2_2700 0.57 +0.1
3,194,522 + Pf6N2E2_2700 0.57 -0.2
3,194,522 + Pf6N2E2_2700 0.57 -0.0
3,194,523 - Pf6N2E2_2700 0.57 +0.3
3,194,523 - Pf6N2E2_2700 0.57 +0.7

Or see this region's nucleotide sequence