Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2416 and Pf6N2E2_2417 are separated by 230 nucleotides Pf6N2E2_2417 and Pf6N2E2_2418 overlap by 4 nucleotides Pf6N2E2_2418 and Pf6N2E2_2419 overlap by 17 nucleotides
Pf6N2E2_2416 - FIG00953472: hypothetical protein, at 2,868,968 to 2,869,438
_2416
Pf6N2E2_2417 - Sensor histidine kinase, at 2,869,669 to 2,870,562
_2417
Pf6N2E2_2418 - DNA-binding response regulator, LuxR family, at 2,870,559 to 2,871,218
_2418
Pf6N2E2_2419 - Transcription regulator [contains diacylglycerol kinase catalytic domain], at 2,871,202 to 2,872,119
_2419
Position (kb)
2869
2870
2871 Strain fitness (log2 ratio)
-2
-1
0
1 at 2868.718 kb on - strand at 2868.718 kb on - strand at 2868.740 kb on + strand at 2868.741 kb on - strand at 2868.963 kb on + strand at 2868.963 kb on + strand at 2868.963 kb on + strand at 2868.963 kb on + strand at 2868.963 kb on + strand at 2868.963 kb on + strand at 2868.963 kb on + strand at 2868.963 kb on + strand at 2868.964 kb on - strand at 2868.964 kb on - strand at 2868.964 kb on - strand at 2868.964 kb on - strand at 2868.964 kb on - strand at 2868.964 kb on - strand at 2868.964 kb on - strand at 2868.964 kb on - strand at 2868.964 kb on - strand at 2868.964 kb on - strand at 2869.102 kb on + strand, within Pf6N2E2_2416 at 2869.102 kb on + strand, within Pf6N2E2_2416 at 2869.102 kb on + strand, within Pf6N2E2_2416 at 2869.102 kb on + strand, within Pf6N2E2_2416 at 2869.102 kb on + strand, within Pf6N2E2_2416 at 2869.102 kb on + strand, within Pf6N2E2_2416 at 2869.103 kb on - strand, within Pf6N2E2_2416 at 2869.103 kb on - strand, within Pf6N2E2_2416 at 2869.103 kb on - strand, within Pf6N2E2_2416 at 2869.103 kb on - strand, within Pf6N2E2_2416 at 2869.103 kb on - strand, within Pf6N2E2_2416 at 2869.103 kb on - strand, within Pf6N2E2_2416 at 2869.103 kb on - strand, within Pf6N2E2_2416 at 2869.103 kb on - strand, within Pf6N2E2_2416 at 2869.180 kb on + strand, within Pf6N2E2_2416 at 2869.180 kb on + strand, within Pf6N2E2_2416 at 2869.472 kb on + strand at 2869.512 kb on + strand at 2869.513 kb on - strand at 2869.524 kb on + strand at 2869.524 kb on + strand at 2869.525 kb on - strand at 2869.527 kb on + strand at 2869.528 kb on - strand at 2869.528 kb on - strand at 2869.669 kb on - strand at 2869.669 kb on - strand at 2869.672 kb on + strand at 2869.673 kb on - strand at 2869.673 kb on - strand at 2869.673 kb on - strand at 2869.673 kb on - strand at 2869.673 kb on - strand at 2869.673 kb on - strand at 2869.736 kb on + strand at 2869.736 kb on + strand at 2869.736 kb on + strand at 2869.736 kb on + strand at 2869.736 kb on + strand at 2869.737 kb on - strand at 2869.737 kb on - strand at 2869.737 kb on - strand at 2869.739 kb on + strand at 2869.740 kb on - strand at 2869.740 kb on - strand at 2869.740 kb on - strand at 2869.746 kb on + strand at 2869.746 kb on + strand at 2869.746 kb on + strand at 2869.746 kb on + strand at 2869.747 kb on - strand at 2869.777 kb on + strand, within Pf6N2E2_2417 at 2869.778 kb on - strand, within Pf6N2E2_2417 at 2869.789 kb on + strand, within Pf6N2E2_2417 at 2869.815 kb on - strand, within Pf6N2E2_2417 at 2869.815 kb on - strand, within Pf6N2E2_2417 at 2870.315 kb on + strand, within Pf6N2E2_2417 at 2870.315 kb on + strand, within Pf6N2E2_2417 at 2870.316 kb on - strand, within Pf6N2E2_2417 at 2870.541 kb on + strand at 2870.547 kb on + strand at 2870.548 kb on - strand at 2870.548 kb on - strand at 2870.548 kb on - strand at 2870.548 kb on - strand at 2870.814 kb on - strand, within Pf6N2E2_2418 at 2871.044 kb on - strand, within Pf6N2E2_2418 at 2871.082 kb on + strand, within Pf6N2E2_2418 at 2871.082 kb on + strand, within Pf6N2E2_2418 at 2871.082 kb on + strand, within Pf6N2E2_2418 at 2871.305 kb on - strand, within Pf6N2E2_2419 at 2871.305 kb on - strand, within Pf6N2E2_2419 at 2871.432 kb on + strand, within Pf6N2E2_2419 at 2871.432 kb on + strand, within Pf6N2E2_2419 at 2871.432 kb on + strand, within Pf6N2E2_2419 at 2871.432 kb on + strand, within Pf6N2E2_2419 at 2871.432 kb on + strand, within Pf6N2E2_2419 at 2871.432 kb on + strand, within Pf6N2E2_2419 at 2871.433 kb on - strand, within Pf6N2E2_2419 at 2871.433 kb on - strand, within Pf6N2E2_2419 at 2871.433 kb on - strand, within Pf6N2E2_2419
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 2,868,718 - -0.7 2,868,718 - +0.7 2,868,740 + +0.7 2,868,741 - -0.5 2,868,963 + +0.4 2,868,963 + +0.8 2,868,963 + -0.3 2,868,963 + -0.1 2,868,963 + +0.3 2,868,963 + +0.1 2,868,963 + -0.5 2,868,963 + +0.3 2,868,964 - -2.4 2,868,964 - +0.3 2,868,964 - +0.2 2,868,964 - -0.2 2,868,964 - +0.9 2,868,964 - -0.1 2,868,964 - +0.1 2,868,964 - -0.7 2,868,964 - -0.8 2,868,964 - +0.1 2,869,102 + Pf6N2E2_2416 0.28 +0.4 2,869,102 + Pf6N2E2_2416 0.28 +0.6 2,869,102 + Pf6N2E2_2416 0.28 +0.0 2,869,102 + Pf6N2E2_2416 0.28 +0.4 2,869,102 + Pf6N2E2_2416 0.28 +0.5 2,869,102 + Pf6N2E2_2416 0.28 -1.0 2,869,103 - Pf6N2E2_2416 0.29 +0.3 2,869,103 - Pf6N2E2_2416 0.29 -0.6 2,869,103 - Pf6N2E2_2416 0.29 -0.3 2,869,103 - Pf6N2E2_2416 0.29 +0.7 2,869,103 - Pf6N2E2_2416 0.29 -0.1 2,869,103 - Pf6N2E2_2416 0.29 -0.5 2,869,103 - Pf6N2E2_2416 0.29 -1.3 2,869,103 - Pf6N2E2_2416 0.29 +0.5 2,869,180 + Pf6N2E2_2416 0.45 +0.7 2,869,180 + Pf6N2E2_2416 0.45 +0.4 2,869,472 + -0.3 2,869,512 + -0.4 2,869,513 - -0.8 2,869,524 + -1.1 2,869,524 + +0.2 2,869,525 - -0.0 2,869,527 + +0.6 2,869,528 - -2.0 2,869,528 - +1.0 2,869,669 - +0.4 2,869,669 - -1.1 2,869,672 + +0.2 2,869,673 - +0.3 2,869,673 - -0.6 2,869,673 - -1.3 2,869,673 - -1.0 2,869,673 - +0.4 2,869,673 - +0.0 2,869,736 + +0.2 2,869,736 + +0.0 2,869,736 + +0.1 2,869,736 + +0.5 2,869,736 + -0.4 2,869,737 - +0.2 2,869,737 - -0.3 2,869,737 - +0.7 2,869,739 + +1.5 2,869,740 - -0.5 2,869,740 - +0.4 2,869,740 - -0.4 2,869,746 + +0.9 2,869,746 + -0.1 2,869,746 + +0.2 2,869,746 + +0.0 2,869,747 - +0.2 2,869,777 + Pf6N2E2_2417 0.12 -1.0 2,869,778 - Pf6N2E2_2417 0.12 +0.4 2,869,789 + Pf6N2E2_2417 0.13 +0.2 2,869,815 - Pf6N2E2_2417 0.16 -0.1 2,869,815 - Pf6N2E2_2417 0.16 -1.7 2,870,315 + Pf6N2E2_2417 0.72 -1.1 2,870,315 + Pf6N2E2_2417 0.72 -0.8 2,870,316 - Pf6N2E2_2417 0.72 +0.2 2,870,541 + +0.3 2,870,547 + -1.1 2,870,548 - +0.6 2,870,548 - -0.9 2,870,548 - -0.3 2,870,548 - +0.1 2,870,814 - Pf6N2E2_2418 0.39 -0.9 2,871,044 - Pf6N2E2_2418 0.73 +0.8 2,871,082 + Pf6N2E2_2418 0.79 -0.3 2,871,082 + Pf6N2E2_2418 0.79 -1.3 2,871,082 + Pf6N2E2_2418 0.79 -0.1 2,871,305 - Pf6N2E2_2419 0.11 -0.1 2,871,305 - Pf6N2E2_2419 0.11 +1.0 2,871,432 + Pf6N2E2_2419 0.25 +1.0 2,871,432 + Pf6N2E2_2419 0.25 -0.4 2,871,432 + Pf6N2E2_2419 0.25 +1.7 2,871,432 + Pf6N2E2_2419 0.25 +0.2 2,871,432 + Pf6N2E2_2419 0.25 -0.7 2,871,432 + Pf6N2E2_2419 0.25 -0.3 2,871,433 - Pf6N2E2_2419 0.25 -0.2 2,871,433 - Pf6N2E2_2419 0.25 +1.0 2,871,433 - Pf6N2E2_2419 0.25 +0.2
Or see this region's nucleotide sequence