Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2417

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2416 and Pf6N2E2_2417 are separated by 230 nucleotidesPf6N2E2_2417 and Pf6N2E2_2418 overlap by 4 nucleotidesPf6N2E2_2418 and Pf6N2E2_2419 overlap by 17 nucleotides Pf6N2E2_2416 - FIG00953472: hypothetical protein, at 2,868,968 to 2,869,438 _2416 Pf6N2E2_2417 - Sensor histidine kinase, at 2,869,669 to 2,870,562 _2417 Pf6N2E2_2418 - DNA-binding response regulator, LuxR family, at 2,870,559 to 2,871,218 _2418 Pf6N2E2_2419 - Transcription regulator [contains diacylglycerol kinase catalytic domain], at 2,871,202 to 2,872,119 _2419 Position (kb) 2869 2870 2871Strain fitness (log2 ratio) -2 -1 0 1at 2868.718 kb on - strandat 2868.718 kb on - strandat 2868.740 kb on + strandat 2868.741 kb on - strandat 2868.963 kb on + strandat 2868.963 kb on + strandat 2868.963 kb on + strandat 2868.963 kb on + strandat 2868.963 kb on + strandat 2868.963 kb on + strandat 2868.963 kb on + strandat 2868.963 kb on + strandat 2868.964 kb on - strandat 2868.964 kb on - strandat 2868.964 kb on - strandat 2868.964 kb on - strandat 2868.964 kb on - strandat 2868.964 kb on - strandat 2868.964 kb on - strandat 2868.964 kb on - strandat 2868.964 kb on - strandat 2868.964 kb on - strandat 2869.102 kb on + strand, within Pf6N2E2_2416at 2869.102 kb on + strand, within Pf6N2E2_2416at 2869.102 kb on + strand, within Pf6N2E2_2416at 2869.102 kb on + strand, within Pf6N2E2_2416at 2869.102 kb on + strand, within Pf6N2E2_2416at 2869.102 kb on + strand, within Pf6N2E2_2416at 2869.103 kb on - strand, within Pf6N2E2_2416at 2869.103 kb on - strand, within Pf6N2E2_2416at 2869.103 kb on - strand, within Pf6N2E2_2416at 2869.103 kb on - strand, within Pf6N2E2_2416at 2869.103 kb on - strand, within Pf6N2E2_2416at 2869.103 kb on - strand, within Pf6N2E2_2416at 2869.103 kb on - strand, within Pf6N2E2_2416at 2869.103 kb on - strand, within Pf6N2E2_2416at 2869.180 kb on + strand, within Pf6N2E2_2416at 2869.180 kb on + strand, within Pf6N2E2_2416at 2869.472 kb on + strandat 2869.512 kb on + strandat 2869.513 kb on - strandat 2869.524 kb on + strandat 2869.524 kb on + strandat 2869.525 kb on - strandat 2869.527 kb on + strandat 2869.528 kb on - strandat 2869.528 kb on - strandat 2869.669 kb on - strandat 2869.669 kb on - strandat 2869.672 kb on + strandat 2869.673 kb on - strandat 2869.673 kb on - strandat 2869.673 kb on - strandat 2869.673 kb on - strandat 2869.673 kb on - strandat 2869.673 kb on - strandat 2869.736 kb on + strandat 2869.736 kb on + strandat 2869.736 kb on + strandat 2869.736 kb on + strandat 2869.736 kb on + strandat 2869.737 kb on - strandat 2869.737 kb on - strandat 2869.737 kb on - strandat 2869.739 kb on + strandat 2869.740 kb on - strandat 2869.740 kb on - strandat 2869.740 kb on - strandat 2869.746 kb on + strandat 2869.746 kb on + strandat 2869.746 kb on + strandat 2869.746 kb on + strandat 2869.747 kb on - strandat 2869.777 kb on + strand, within Pf6N2E2_2417at 2869.778 kb on - strand, within Pf6N2E2_2417at 2869.789 kb on + strand, within Pf6N2E2_2417at 2869.815 kb on - strand, within Pf6N2E2_2417at 2869.815 kb on - strand, within Pf6N2E2_2417at 2870.315 kb on + strand, within Pf6N2E2_2417at 2870.315 kb on + strand, within Pf6N2E2_2417at 2870.316 kb on - strand, within Pf6N2E2_2417at 2870.541 kb on + strandat 2870.547 kb on + strandat 2870.548 kb on - strandat 2870.548 kb on - strandat 2870.548 kb on - strandat 2870.548 kb on - strandat 2870.814 kb on - strand, within Pf6N2E2_2418at 2871.044 kb on - strand, within Pf6N2E2_2418at 2871.082 kb on + strand, within Pf6N2E2_2418at 2871.082 kb on + strand, within Pf6N2E2_2418at 2871.082 kb on + strand, within Pf6N2E2_2418at 2871.305 kb on - strand, within Pf6N2E2_2419at 2871.305 kb on - strand, within Pf6N2E2_2419at 2871.432 kb on + strand, within Pf6N2E2_2419at 2871.432 kb on + strand, within Pf6N2E2_2419at 2871.432 kb on + strand, within Pf6N2E2_2419at 2871.432 kb on + strand, within Pf6N2E2_2419at 2871.432 kb on + strand, within Pf6N2E2_2419at 2871.432 kb on + strand, within Pf6N2E2_2419at 2871.433 kb on - strand, within Pf6N2E2_2419at 2871.433 kb on - strand, within Pf6N2E2_2419at 2871.433 kb on - strand, within Pf6N2E2_2419

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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2,868,718 - -0.7
2,868,718 - +0.7
2,868,740 + +0.7
2,868,741 - -0.5
2,868,963 + +0.4
2,868,963 + +0.8
2,868,963 + -0.3
2,868,963 + -0.1
2,868,963 + +0.3
2,868,963 + +0.1
2,868,963 + -0.5
2,868,963 + +0.3
2,868,964 - -2.4
2,868,964 - +0.3
2,868,964 - +0.2
2,868,964 - -0.2
2,868,964 - +0.9
2,868,964 - -0.1
2,868,964 - +0.1
2,868,964 - -0.7
2,868,964 - -0.8
2,868,964 - +0.1
2,869,102 + Pf6N2E2_2416 0.28 +0.4
2,869,102 + Pf6N2E2_2416 0.28 +0.6
2,869,102 + Pf6N2E2_2416 0.28 +0.0
2,869,102 + Pf6N2E2_2416 0.28 +0.4
2,869,102 + Pf6N2E2_2416 0.28 +0.5
2,869,102 + Pf6N2E2_2416 0.28 -1.0
2,869,103 - Pf6N2E2_2416 0.29 +0.3
2,869,103 - Pf6N2E2_2416 0.29 -0.6
2,869,103 - Pf6N2E2_2416 0.29 -0.3
2,869,103 - Pf6N2E2_2416 0.29 +0.7
2,869,103 - Pf6N2E2_2416 0.29 -0.1
2,869,103 - Pf6N2E2_2416 0.29 -0.5
2,869,103 - Pf6N2E2_2416 0.29 -1.3
2,869,103 - Pf6N2E2_2416 0.29 +0.5
2,869,180 + Pf6N2E2_2416 0.45 +0.7
2,869,180 + Pf6N2E2_2416 0.45 +0.4
2,869,472 + -0.3
2,869,512 + -0.4
2,869,513 - -0.8
2,869,524 + -1.1
2,869,524 + +0.2
2,869,525 - -0.0
2,869,527 + +0.6
2,869,528 - -2.0
2,869,528 - +1.0
2,869,669 - +0.4
2,869,669 - -1.1
2,869,672 + +0.2
2,869,673 - +0.3
2,869,673 - -0.6
2,869,673 - -1.3
2,869,673 - -1.0
2,869,673 - +0.4
2,869,673 - +0.0
2,869,736 + +0.2
2,869,736 + +0.0
2,869,736 + +0.1
2,869,736 + +0.5
2,869,736 + -0.4
2,869,737 - +0.2
2,869,737 - -0.3
2,869,737 - +0.7
2,869,739 + +1.5
2,869,740 - -0.5
2,869,740 - +0.4
2,869,740 - -0.4
2,869,746 + +0.9
2,869,746 + -0.1
2,869,746 + +0.2
2,869,746 + +0.0
2,869,747 - +0.2
2,869,777 + Pf6N2E2_2417 0.12 -1.0
2,869,778 - Pf6N2E2_2417 0.12 +0.4
2,869,789 + Pf6N2E2_2417 0.13 +0.2
2,869,815 - Pf6N2E2_2417 0.16 -0.1
2,869,815 - Pf6N2E2_2417 0.16 -1.7
2,870,315 + Pf6N2E2_2417 0.72 -1.1
2,870,315 + Pf6N2E2_2417 0.72 -0.8
2,870,316 - Pf6N2E2_2417 0.72 +0.2
2,870,541 + +0.3
2,870,547 + -1.1
2,870,548 - +0.6
2,870,548 - -0.9
2,870,548 - -0.3
2,870,548 - +0.1
2,870,814 - Pf6N2E2_2418 0.39 -0.9
2,871,044 - Pf6N2E2_2418 0.73 +0.8
2,871,082 + Pf6N2E2_2418 0.79 -0.3
2,871,082 + Pf6N2E2_2418 0.79 -1.3
2,871,082 + Pf6N2E2_2418 0.79 -0.1
2,871,305 - Pf6N2E2_2419 0.11 -0.1
2,871,305 - Pf6N2E2_2419 0.11 +1.0
2,871,432 + Pf6N2E2_2419 0.25 +1.0
2,871,432 + Pf6N2E2_2419 0.25 -0.4
2,871,432 + Pf6N2E2_2419 0.25 +1.7
2,871,432 + Pf6N2E2_2419 0.25 +0.2
2,871,432 + Pf6N2E2_2419 0.25 -0.7
2,871,432 + Pf6N2E2_2419 0.25 -0.3
2,871,433 - Pf6N2E2_2419 0.25 -0.2
2,871,433 - Pf6N2E2_2419 0.25 +1.0
2,871,433 - Pf6N2E2_2419 0.25 +0.2

Or see this region's nucleotide sequence