Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2282

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2281 and Pf6N2E2_2282 are separated by 171 nucleotidesPf6N2E2_2282 and Pf6N2E2_2283 are separated by 241 nucleotidesPf6N2E2_2283 and Pf6N2E2_2284 are separated by 10 nucleotides Pf6N2E2_2281 - Beta N-acetyl-glucosaminidase (EC 3.2.1.52), at 2,700,575 to 2,701,585 _2281 Pf6N2E2_2282 - Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family, at 2,701,757 to 2,702,464 _2282 Pf6N2E2_2283 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 2,702,706 to 2,703,314 _2283 Pf6N2E2_2284 - Cell division inhibitor-related protein, at 2,703,325 to 2,703,798 _2284 Position (kb) 2701 2702 2703Strain fitness (log2 ratio) -2 -1 0 1 2at 2700.940 kb on - strand, within Pf6N2E2_2281at 2700.940 kb on - strand, within Pf6N2E2_2281at 2701.299 kb on + strand, within Pf6N2E2_2281at 2701.585 kb on + strandat 2701.585 kb on + strandat 2701.585 kb on + strandat 2701.585 kb on + strandat 2701.585 kb on + strandat 2701.599 kb on + strandat 2701.600 kb on - strandat 2701.682 kb on + strandat 2701.683 kb on - strandat 2701.692 kb on + strandat 2701.718 kb on + strandat 2701.732 kb on + strandat 2701.732 kb on + strandat 2701.733 kb on - strandat 2701.733 kb on - strandat 2701.893 kb on - strand, within Pf6N2E2_2282at 2701.893 kb on - strand, within Pf6N2E2_2282at 2701.895 kb on - strand, within Pf6N2E2_2282at 2701.895 kb on - strand, within Pf6N2E2_2282at 2702.047 kb on - strand, within Pf6N2E2_2282at 2702.083 kb on - strand, within Pf6N2E2_2282at 2702.223 kb on - strand, within Pf6N2E2_2282at 2702.223 kb on - strand, within Pf6N2E2_2282at 2702.335 kb on - strand, within Pf6N2E2_2282at 2702.499 kb on + strandat 2702.500 kb on - strandat 2702.500 kb on - strandat 2702.558 kb on + strandat 2702.559 kb on - strandat 2702.559 kb on - strandat 2702.559 kb on - strandat 2702.559 kb on - strandat 2702.563 kb on - strandat 2702.585 kb on + strandat 2702.586 kb on - strandat 2702.586 kb on - strandat 2702.586 kb on - strandat 2702.665 kb on - strandat 2702.665 kb on - strandat 2702.705 kb on + strandat 2702.710 kb on + strandat 2703.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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2,700,940 - Pf6N2E2_2281 0.36 -0.9
2,700,940 - Pf6N2E2_2281 0.36 -0.1
2,701,299 + Pf6N2E2_2281 0.72 +0.0
2,701,585 + +0.4
2,701,585 + +0.1
2,701,585 + +0.1
2,701,585 + +0.3
2,701,585 + -0.9
2,701,599 + -0.1
2,701,600 - +0.5
2,701,682 + -0.8
2,701,683 - -1.4
2,701,692 + +0.3
2,701,718 + +0.5
2,701,732 + -0.1
2,701,732 + +2.7
2,701,733 - +0.7
2,701,733 - -0.3
2,701,893 - Pf6N2E2_2282 0.19 -1.3
2,701,893 - Pf6N2E2_2282 0.19 -0.7
2,701,895 - Pf6N2E2_2282 0.19 +0.2
2,701,895 - Pf6N2E2_2282 0.19 -0.7
2,702,047 - Pf6N2E2_2282 0.41 -0.8
2,702,083 - Pf6N2E2_2282 0.46 -1.7
2,702,223 - Pf6N2E2_2282 0.66 -1.9
2,702,223 - Pf6N2E2_2282 0.66 +0.3
2,702,335 - Pf6N2E2_2282 0.82 +0.4
2,702,499 + -2.3
2,702,500 - +0.3
2,702,500 - -0.1
2,702,558 + -0.6
2,702,559 - -0.1
2,702,559 - -0.5
2,702,559 - -0.4
2,702,559 - +1.2
2,702,563 - -1.1
2,702,585 + -0.6
2,702,586 - -0.5
2,702,586 - -0.8
2,702,586 - -0.4
2,702,665 - +0.4
2,702,665 - +1.2
2,702,705 + +0.1
2,702,710 + -0.4
2,703,324 + +0.1

Or see this region's nucleotide sequence