Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2093 and Pf6N2E2_2094 are separated by 130 nucleotides Pf6N2E2_2094 and Pf6N2E2_2095 are separated by 132 nucleotides
Pf6N2E2_2093 - Transcriptional regulator, LysR family, at 2,488,983 to 2,489,867
_2093
Pf6N2E2_2094 - Choline dehydrogenase (EC 1.1.99.1), at 2,489,998 to 2,491,641
_2094
Pf6N2E2_2095 - Permeases of the major facilitator superfamily, at 2,491,774 to 2,493,396
_2095
Position (kb)
2489
2490
2491
2492 Strain fitness (log2 ratio)
-1
0
1
2 at 2489.029 kb on + strand at 2489.029 kb on + strand at 2489.029 kb on + strand at 2489.029 kb on + strand at 2489.030 kb on - strand at 2489.030 kb on - strand at 2489.089 kb on + strand, within Pf6N2E2_2093 at 2489.089 kb on + strand, within Pf6N2E2_2093 at 2489.089 kb on + strand, within Pf6N2E2_2093 at 2489.089 kb on + strand, within Pf6N2E2_2093 at 2489.152 kb on + strand, within Pf6N2E2_2093 at 2489.152 kb on + strand, within Pf6N2E2_2093 at 2489.152 kb on + strand, within Pf6N2E2_2093 at 2489.152 kb on + strand, within Pf6N2E2_2093 at 2489.152 kb on + strand, within Pf6N2E2_2093 at 2489.152 kb on + strand, within Pf6N2E2_2093 at 2489.152 kb on + strand, within Pf6N2E2_2093 at 2489.153 kb on - strand, within Pf6N2E2_2093 at 2489.153 kb on - strand, within Pf6N2E2_2093 at 2489.153 kb on - strand, within Pf6N2E2_2093 at 2489.153 kb on - strand, within Pf6N2E2_2093 at 2489.153 kb on - strand, within Pf6N2E2_2093 at 2489.153 kb on - strand, within Pf6N2E2_2093 at 2489.153 kb on - strand, within Pf6N2E2_2093 at 2489.296 kb on + strand, within Pf6N2E2_2093 at 2489.359 kb on + strand, within Pf6N2E2_2093 at 2489.359 kb on + strand, within Pf6N2E2_2093 at 2489.360 kb on - strand, within Pf6N2E2_2093 at 2489.375 kb on - strand, within Pf6N2E2_2093 at 2489.389 kb on + strand, within Pf6N2E2_2093 at 2489.389 kb on + strand, within Pf6N2E2_2093 at 2489.702 kb on - strand, within Pf6N2E2_2093 at 2489.906 kb on - strand at 2489.908 kb on - strand at 2489.954 kb on + strand at 2489.955 kb on - strand at 2489.961 kb on + strand at 2489.961 kb on + strand at 2489.962 kb on - strand at 2489.962 kb on - strand at 2489.962 kb on - strand at 2490.025 kb on + strand at 2490.025 kb on + strand at 2490.026 kb on - strand at 2490.130 kb on + strand at 2490.131 kb on - strand at 2490.131 kb on - strand at 2490.131 kb on - strand at 2490.241 kb on + strand, within Pf6N2E2_2094 at 2490.292 kb on + strand, within Pf6N2E2_2094 at 2490.292 kb on + strand, within Pf6N2E2_2094 at 2490.293 kb on - strand, within Pf6N2E2_2094 at 2490.293 kb on - strand, within Pf6N2E2_2094 at 2490.293 kb on - strand, within Pf6N2E2_2094 at 2490.293 kb on - strand, within Pf6N2E2_2094 at 2490.293 kb on - strand, within Pf6N2E2_2094 at 2490.316 kb on + strand, within Pf6N2E2_2094 at 2490.317 kb on - strand, within Pf6N2E2_2094 at 2490.694 kb on + strand, within Pf6N2E2_2094 at 2490.907 kb on + strand, within Pf6N2E2_2094 at 2490.907 kb on + strand, within Pf6N2E2_2094 at 2490.907 kb on + strand, within Pf6N2E2_2094 at 2490.907 kb on + strand, within Pf6N2E2_2094 at 2490.908 kb on - strand, within Pf6N2E2_2094 at 2490.908 kb on - strand, within Pf6N2E2_2094 at 2490.983 kb on - strand, within Pf6N2E2_2094 at 2490.989 kb on - strand, within Pf6N2E2_2094 at 2491.234 kb on + strand, within Pf6N2E2_2094 at 2491.234 kb on + strand, within Pf6N2E2_2094 at 2491.234 kb on + strand, within Pf6N2E2_2094 at 2491.235 kb on - strand, within Pf6N2E2_2094 at 2491.235 kb on - strand, within Pf6N2E2_2094 at 2491.235 kb on - strand, within Pf6N2E2_2094 at 2491.336 kb on + strand, within Pf6N2E2_2094 at 2491.336 kb on + strand, within Pf6N2E2_2094 at 2491.336 kb on + strand, within Pf6N2E2_2094 at 2491.336 kb on + strand, within Pf6N2E2_2094 at 2491.337 kb on - strand, within Pf6N2E2_2094 at 2491.608 kb on + strand at 2491.609 kb on - strand at 2491.633 kb on - strand at 2491.773 kb on + strand at 2491.773 kb on + strand at 2491.880 kb on - strand at 2492.053 kb on + strand, within Pf6N2E2_2095 at 2492.053 kb on + strand, within Pf6N2E2_2095 at 2492.054 kb on - strand, within Pf6N2E2_2095 at 2492.119 kb on + strand, within Pf6N2E2_2095 at 2492.119 kb on + strand, within Pf6N2E2_2095 at 2492.215 kb on + strand, within Pf6N2E2_2095 at 2492.215 kb on + strand, within Pf6N2E2_2095 at 2492.216 kb on - strand, within Pf6N2E2_2095 at 2492.216 kb on - strand, within Pf6N2E2_2095 at 2492.216 kb on - strand, within Pf6N2E2_2095 at 2492.216 kb on - strand, within Pf6N2E2_2095 at 2492.216 kb on - strand, within Pf6N2E2_2095 at 2492.569 kb on + strand, within Pf6N2E2_2095 at 2492.570 kb on - strand, within Pf6N2E2_2095 at 2492.570 kb on - strand, within Pf6N2E2_2095 at 2492.584 kb on + strand, within Pf6N2E2_2095 at 2492.584 kb on + strand, within Pf6N2E2_2095 at 2492.585 kb on - strand, within Pf6N2E2_2095 at 2492.585 kb on - strand, within Pf6N2E2_2095 at 2492.585 kb on - strand, within Pf6N2E2_2095 at 2492.585 kb on - strand, within Pf6N2E2_2095
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 2,489,029 + +0.6 2,489,029 + -1.3 2,489,029 + -0.5 2,489,029 + +0.5 2,489,030 - +0.8 2,489,030 - +0.7 2,489,089 + Pf6N2E2_2093 0.12 -0.7 2,489,089 + Pf6N2E2_2093 0.12 +0.1 2,489,089 + Pf6N2E2_2093 0.12 -0.9 2,489,089 + Pf6N2E2_2093 0.12 -0.4 2,489,152 + Pf6N2E2_2093 0.19 -0.5 2,489,152 + Pf6N2E2_2093 0.19 +0.6 2,489,152 + Pf6N2E2_2093 0.19 +0.1 2,489,152 + Pf6N2E2_2093 0.19 -1.3 2,489,152 + Pf6N2E2_2093 0.19 -0.1 2,489,152 + Pf6N2E2_2093 0.19 -0.2 2,489,152 + Pf6N2E2_2093 0.19 +1.1 2,489,153 - Pf6N2E2_2093 0.19 +0.1 2,489,153 - Pf6N2E2_2093 0.19 +0.8 2,489,153 - Pf6N2E2_2093 0.19 +1.2 2,489,153 - Pf6N2E2_2093 0.19 -1.0 2,489,153 - Pf6N2E2_2093 0.19 +0.1 2,489,153 - Pf6N2E2_2093 0.19 -0.2 2,489,153 - Pf6N2E2_2093 0.19 -0.2 2,489,296 + Pf6N2E2_2093 0.35 +0.9 2,489,359 + Pf6N2E2_2093 0.42 +0.2 2,489,359 + Pf6N2E2_2093 0.42 -0.3 2,489,360 - Pf6N2E2_2093 0.43 -0.9 2,489,375 - Pf6N2E2_2093 0.44 -0.8 2,489,389 + Pf6N2E2_2093 0.46 +0.2 2,489,389 + Pf6N2E2_2093 0.46 +0.3 2,489,702 - Pf6N2E2_2093 0.81 +0.2 2,489,906 - +0.4 2,489,908 - +0.7 2,489,954 + +0.3 2,489,955 - +0.5 2,489,961 + +0.3 2,489,961 + -0.2 2,489,962 - +0.9 2,489,962 - -0.3 2,489,962 - +0.6 2,490,025 + -0.6 2,490,025 + -0.1 2,490,026 - +1.8 2,490,130 + -0.9 2,490,131 - +0.1 2,490,131 - +0.4 2,490,131 - -0.0 2,490,241 + Pf6N2E2_2094 0.15 +0.1 2,490,292 + Pf6N2E2_2094 0.18 +0.6 2,490,292 + Pf6N2E2_2094 0.18 +1.0 2,490,293 - Pf6N2E2_2094 0.18 -1.0 2,490,293 - Pf6N2E2_2094 0.18 +0.1 2,490,293 - Pf6N2E2_2094 0.18 -0.8 2,490,293 - Pf6N2E2_2094 0.18 +1.2 2,490,293 - Pf6N2E2_2094 0.18 -1.5 2,490,316 + Pf6N2E2_2094 0.19 +0.4 2,490,317 - Pf6N2E2_2094 0.19 +0.5 2,490,694 + Pf6N2E2_2094 0.42 -0.1 2,490,907 + Pf6N2E2_2094 0.55 -0.3 2,490,907 + Pf6N2E2_2094 0.55 -0.2 2,490,907 + Pf6N2E2_2094 0.55 +0.6 2,490,907 + Pf6N2E2_2094 0.55 +0.5 2,490,908 - Pf6N2E2_2094 0.55 -0.9 2,490,908 - Pf6N2E2_2094 0.55 +0.1 2,490,983 - Pf6N2E2_2094 0.60 -0.6 2,490,989 - Pf6N2E2_2094 0.60 +0.4 2,491,234 + Pf6N2E2_2094 0.75 +0.9 2,491,234 + Pf6N2E2_2094 0.75 -0.6 2,491,234 + Pf6N2E2_2094 0.75 +0.2 2,491,235 - Pf6N2E2_2094 0.75 +0.2 2,491,235 - Pf6N2E2_2094 0.75 -0.7 2,491,235 - Pf6N2E2_2094 0.75 +0.6 2,491,336 + Pf6N2E2_2094 0.81 +0.7 2,491,336 + Pf6N2E2_2094 0.81 -0.1 2,491,336 + Pf6N2E2_2094 0.81 -0.9 2,491,336 + Pf6N2E2_2094 0.81 +0.3 2,491,337 - Pf6N2E2_2094 0.81 +0.5 2,491,608 + +0.2 2,491,609 - -0.1 2,491,633 - -0.3 2,491,773 + -0.6 2,491,773 + +0.6 2,491,880 - +0.3 2,492,053 + Pf6N2E2_2095 0.17 +0.8 2,492,053 + Pf6N2E2_2095 0.17 -0.0 2,492,054 - Pf6N2E2_2095 0.17 -0.1 2,492,119 + Pf6N2E2_2095 0.21 +0.8 2,492,119 + Pf6N2E2_2095 0.21 +0.3 2,492,215 + Pf6N2E2_2095 0.27 -0.7 2,492,215 + Pf6N2E2_2095 0.27 -0.3 2,492,216 - Pf6N2E2_2095 0.27 +0.5 2,492,216 - Pf6N2E2_2095 0.27 +1.1 2,492,216 - Pf6N2E2_2095 0.27 -0.7 2,492,216 - Pf6N2E2_2095 0.27 +0.2 2,492,216 - Pf6N2E2_2095 0.27 -0.1 2,492,569 + Pf6N2E2_2095 0.49 -0.8 2,492,570 - Pf6N2E2_2095 0.49 +0.1 2,492,570 - Pf6N2E2_2095 0.49 +0.2 2,492,584 + Pf6N2E2_2095 0.50 +1.8 2,492,584 + Pf6N2E2_2095 0.50 -0.3 2,492,585 - Pf6N2E2_2095 0.50 +0.7 2,492,585 - Pf6N2E2_2095 0.50 +0.9 2,492,585 - Pf6N2E2_2095 0.50 -0.5 2,492,585 - Pf6N2E2_2095 0.50 -0.5
Or see this region's nucleotide sequence