Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2094

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2093 and Pf6N2E2_2094 are separated by 130 nucleotidesPf6N2E2_2094 and Pf6N2E2_2095 are separated by 132 nucleotides Pf6N2E2_2093 - Transcriptional regulator, LysR family, at 2,488,983 to 2,489,867 _2093 Pf6N2E2_2094 - Choline dehydrogenase (EC 1.1.99.1), at 2,489,998 to 2,491,641 _2094 Pf6N2E2_2095 - Permeases of the major facilitator superfamily, at 2,491,774 to 2,493,396 _2095 Position (kb) 2489 2490 2491 2492Strain fitness (log2 ratio) -1 0 1 2at 2489.029 kb on + strandat 2489.029 kb on + strandat 2489.029 kb on + strandat 2489.029 kb on + strandat 2489.030 kb on - strandat 2489.030 kb on - strandat 2489.089 kb on + strand, within Pf6N2E2_2093at 2489.089 kb on + strand, within Pf6N2E2_2093at 2489.089 kb on + strand, within Pf6N2E2_2093at 2489.089 kb on + strand, within Pf6N2E2_2093at 2489.152 kb on + strand, within Pf6N2E2_2093at 2489.152 kb on + strand, within Pf6N2E2_2093at 2489.152 kb on + strand, within Pf6N2E2_2093at 2489.152 kb on + strand, within Pf6N2E2_2093at 2489.152 kb on + strand, within Pf6N2E2_2093at 2489.152 kb on + strand, within Pf6N2E2_2093at 2489.152 kb on + strand, within Pf6N2E2_2093at 2489.153 kb on - strand, within Pf6N2E2_2093at 2489.153 kb on - strand, within Pf6N2E2_2093at 2489.153 kb on - strand, within Pf6N2E2_2093at 2489.153 kb on - strand, within Pf6N2E2_2093at 2489.153 kb on - strand, within Pf6N2E2_2093at 2489.153 kb on - strand, within Pf6N2E2_2093at 2489.153 kb on - strand, within Pf6N2E2_2093at 2489.296 kb on + strand, within Pf6N2E2_2093at 2489.359 kb on + strand, within Pf6N2E2_2093at 2489.359 kb on + strand, within Pf6N2E2_2093at 2489.360 kb on - strand, within Pf6N2E2_2093at 2489.375 kb on - strand, within Pf6N2E2_2093at 2489.389 kb on + strand, within Pf6N2E2_2093at 2489.389 kb on + strand, within Pf6N2E2_2093at 2489.702 kb on - strand, within Pf6N2E2_2093at 2489.906 kb on - strandat 2489.908 kb on - strandat 2489.954 kb on + strandat 2489.955 kb on - strandat 2489.961 kb on + strandat 2489.961 kb on + strandat 2489.962 kb on - strandat 2489.962 kb on - strandat 2489.962 kb on - strandat 2490.025 kb on + strandat 2490.025 kb on + strandat 2490.026 kb on - strandat 2490.130 kb on + strandat 2490.131 kb on - strandat 2490.131 kb on - strandat 2490.131 kb on - strandat 2490.241 kb on + strand, within Pf6N2E2_2094at 2490.292 kb on + strand, within Pf6N2E2_2094at 2490.292 kb on + strand, within Pf6N2E2_2094at 2490.293 kb on - strand, within Pf6N2E2_2094at 2490.293 kb on - strand, within Pf6N2E2_2094at 2490.293 kb on - strand, within Pf6N2E2_2094at 2490.293 kb on - strand, within Pf6N2E2_2094at 2490.293 kb on - strand, within Pf6N2E2_2094at 2490.316 kb on + strand, within Pf6N2E2_2094at 2490.317 kb on - strand, within Pf6N2E2_2094at 2490.694 kb on + strand, within Pf6N2E2_2094at 2490.907 kb on + strand, within Pf6N2E2_2094at 2490.907 kb on + strand, within Pf6N2E2_2094at 2490.907 kb on + strand, within Pf6N2E2_2094at 2490.907 kb on + strand, within Pf6N2E2_2094at 2490.908 kb on - strand, within Pf6N2E2_2094at 2490.908 kb on - strand, within Pf6N2E2_2094at 2490.983 kb on - strand, within Pf6N2E2_2094at 2490.989 kb on - strand, within Pf6N2E2_2094at 2491.234 kb on + strand, within Pf6N2E2_2094at 2491.234 kb on + strand, within Pf6N2E2_2094at 2491.234 kb on + strand, within Pf6N2E2_2094at 2491.235 kb on - strand, within Pf6N2E2_2094at 2491.235 kb on - strand, within Pf6N2E2_2094at 2491.235 kb on - strand, within Pf6N2E2_2094at 2491.336 kb on + strand, within Pf6N2E2_2094at 2491.336 kb on + strand, within Pf6N2E2_2094at 2491.336 kb on + strand, within Pf6N2E2_2094at 2491.336 kb on + strand, within Pf6N2E2_2094at 2491.337 kb on - strand, within Pf6N2E2_2094at 2491.608 kb on + strandat 2491.609 kb on - strandat 2491.633 kb on - strandat 2491.773 kb on + strandat 2491.773 kb on + strandat 2491.880 kb on - strandat 2492.053 kb on + strand, within Pf6N2E2_2095at 2492.053 kb on + strand, within Pf6N2E2_2095at 2492.054 kb on - strand, within Pf6N2E2_2095at 2492.119 kb on + strand, within Pf6N2E2_2095at 2492.119 kb on + strand, within Pf6N2E2_2095at 2492.215 kb on + strand, within Pf6N2E2_2095at 2492.215 kb on + strand, within Pf6N2E2_2095at 2492.216 kb on - strand, within Pf6N2E2_2095at 2492.216 kb on - strand, within Pf6N2E2_2095at 2492.216 kb on - strand, within Pf6N2E2_2095at 2492.216 kb on - strand, within Pf6N2E2_2095at 2492.216 kb on - strand, within Pf6N2E2_2095at 2492.569 kb on + strand, within Pf6N2E2_2095at 2492.570 kb on - strand, within Pf6N2E2_2095at 2492.570 kb on - strand, within Pf6N2E2_2095at 2492.584 kb on + strand, within Pf6N2E2_2095at 2492.584 kb on + strand, within Pf6N2E2_2095at 2492.585 kb on - strand, within Pf6N2E2_2095at 2492.585 kb on - strand, within Pf6N2E2_2095at 2492.585 kb on - strand, within Pf6N2E2_2095at 2492.585 kb on - strand, within Pf6N2E2_2095

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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2,489,029 + +0.6
2,489,029 + -1.3
2,489,029 + -0.5
2,489,029 + +0.5
2,489,030 - +0.8
2,489,030 - +0.7
2,489,089 + Pf6N2E2_2093 0.12 -0.7
2,489,089 + Pf6N2E2_2093 0.12 +0.1
2,489,089 + Pf6N2E2_2093 0.12 -0.9
2,489,089 + Pf6N2E2_2093 0.12 -0.4
2,489,152 + Pf6N2E2_2093 0.19 -0.5
2,489,152 + Pf6N2E2_2093 0.19 +0.6
2,489,152 + Pf6N2E2_2093 0.19 +0.1
2,489,152 + Pf6N2E2_2093 0.19 -1.3
2,489,152 + Pf6N2E2_2093 0.19 -0.1
2,489,152 + Pf6N2E2_2093 0.19 -0.2
2,489,152 + Pf6N2E2_2093 0.19 +1.1
2,489,153 - Pf6N2E2_2093 0.19 +0.1
2,489,153 - Pf6N2E2_2093 0.19 +0.8
2,489,153 - Pf6N2E2_2093 0.19 +1.2
2,489,153 - Pf6N2E2_2093 0.19 -1.0
2,489,153 - Pf6N2E2_2093 0.19 +0.1
2,489,153 - Pf6N2E2_2093 0.19 -0.2
2,489,153 - Pf6N2E2_2093 0.19 -0.2
2,489,296 + Pf6N2E2_2093 0.35 +0.9
2,489,359 + Pf6N2E2_2093 0.42 +0.2
2,489,359 + Pf6N2E2_2093 0.42 -0.3
2,489,360 - Pf6N2E2_2093 0.43 -0.9
2,489,375 - Pf6N2E2_2093 0.44 -0.8
2,489,389 + Pf6N2E2_2093 0.46 +0.2
2,489,389 + Pf6N2E2_2093 0.46 +0.3
2,489,702 - Pf6N2E2_2093 0.81 +0.2
2,489,906 - +0.4
2,489,908 - +0.7
2,489,954 + +0.3
2,489,955 - +0.5
2,489,961 + +0.3
2,489,961 + -0.2
2,489,962 - +0.9
2,489,962 - -0.3
2,489,962 - +0.6
2,490,025 + -0.6
2,490,025 + -0.1
2,490,026 - +1.8
2,490,130 + -0.9
2,490,131 - +0.1
2,490,131 - +0.4
2,490,131 - -0.0
2,490,241 + Pf6N2E2_2094 0.15 +0.1
2,490,292 + Pf6N2E2_2094 0.18 +0.6
2,490,292 + Pf6N2E2_2094 0.18 +1.0
2,490,293 - Pf6N2E2_2094 0.18 -1.0
2,490,293 - Pf6N2E2_2094 0.18 +0.1
2,490,293 - Pf6N2E2_2094 0.18 -0.8
2,490,293 - Pf6N2E2_2094 0.18 +1.2
2,490,293 - Pf6N2E2_2094 0.18 -1.5
2,490,316 + Pf6N2E2_2094 0.19 +0.4
2,490,317 - Pf6N2E2_2094 0.19 +0.5
2,490,694 + Pf6N2E2_2094 0.42 -0.1
2,490,907 + Pf6N2E2_2094 0.55 -0.3
2,490,907 + Pf6N2E2_2094 0.55 -0.2
2,490,907 + Pf6N2E2_2094 0.55 +0.6
2,490,907 + Pf6N2E2_2094 0.55 +0.5
2,490,908 - Pf6N2E2_2094 0.55 -0.9
2,490,908 - Pf6N2E2_2094 0.55 +0.1
2,490,983 - Pf6N2E2_2094 0.60 -0.6
2,490,989 - Pf6N2E2_2094 0.60 +0.4
2,491,234 + Pf6N2E2_2094 0.75 +0.9
2,491,234 + Pf6N2E2_2094 0.75 -0.6
2,491,234 + Pf6N2E2_2094 0.75 +0.2
2,491,235 - Pf6N2E2_2094 0.75 +0.2
2,491,235 - Pf6N2E2_2094 0.75 -0.7
2,491,235 - Pf6N2E2_2094 0.75 +0.6
2,491,336 + Pf6N2E2_2094 0.81 +0.7
2,491,336 + Pf6N2E2_2094 0.81 -0.1
2,491,336 + Pf6N2E2_2094 0.81 -0.9
2,491,336 + Pf6N2E2_2094 0.81 +0.3
2,491,337 - Pf6N2E2_2094 0.81 +0.5
2,491,608 + +0.2
2,491,609 - -0.1
2,491,633 - -0.3
2,491,773 + -0.6
2,491,773 + +0.6
2,491,880 - +0.3
2,492,053 + Pf6N2E2_2095 0.17 +0.8
2,492,053 + Pf6N2E2_2095 0.17 -0.0
2,492,054 - Pf6N2E2_2095 0.17 -0.1
2,492,119 + Pf6N2E2_2095 0.21 +0.8
2,492,119 + Pf6N2E2_2095 0.21 +0.3
2,492,215 + Pf6N2E2_2095 0.27 -0.7
2,492,215 + Pf6N2E2_2095 0.27 -0.3
2,492,216 - Pf6N2E2_2095 0.27 +0.5
2,492,216 - Pf6N2E2_2095 0.27 +1.1
2,492,216 - Pf6N2E2_2095 0.27 -0.7
2,492,216 - Pf6N2E2_2095 0.27 +0.2
2,492,216 - Pf6N2E2_2095 0.27 -0.1
2,492,569 + Pf6N2E2_2095 0.49 -0.8
2,492,570 - Pf6N2E2_2095 0.49 +0.1
2,492,570 - Pf6N2E2_2095 0.49 +0.2
2,492,584 + Pf6N2E2_2095 0.50 +1.8
2,492,584 + Pf6N2E2_2095 0.50 -0.3
2,492,585 - Pf6N2E2_2095 0.50 +0.7
2,492,585 - Pf6N2E2_2095 0.50 +0.9
2,492,585 - Pf6N2E2_2095 0.50 -0.5
2,492,585 - Pf6N2E2_2095 0.50 -0.5

Or see this region's nucleotide sequence