Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1905

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1904 and Pf6N2E2_1905 are separated by 129 nucleotidesPf6N2E2_1905 and Pf6N2E2_1906 are separated by 272 nucleotides Pf6N2E2_1904 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 2,255,744 to 2,258,002 _1904 Pf6N2E2_1905 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 2,258,132 to 2,258,578 _1905 Pf6N2E2_1906 - Aldehyde dehydrogenase (EC 1.2.1.3), at 2,258,851 to 2,260,302 _1906 Position (kb) 2258 2259Strain fitness (log2 ratio) -3 -2 -1 0 1at 2257.299 kb on + strand, within Pf6N2E2_1904at 2257.299 kb on + strand, within Pf6N2E2_1904at 2257.309 kb on + strand, within Pf6N2E2_1904at 2257.326 kb on + strand, within Pf6N2E2_1904at 2257.326 kb on + strand, within Pf6N2E2_1904at 2257.443 kb on + strand, within Pf6N2E2_1904at 2257.444 kb on - strand, within Pf6N2E2_1904at 2257.444 kb on - strand, within Pf6N2E2_1904at 2257.541 kb on + strand, within Pf6N2E2_1904at 2257.542 kb on - strand, within Pf6N2E2_1904at 2257.584 kb on + strand, within Pf6N2E2_1904at 2257.584 kb on + strand, within Pf6N2E2_1904at 2257.584 kb on + strand, within Pf6N2E2_1904at 2257.585 kb on - strand, within Pf6N2E2_1904at 2257.585 kb on - strand, within Pf6N2E2_1904at 2257.585 kb on - strand, within Pf6N2E2_1904at 2257.691 kb on + strand, within Pf6N2E2_1904at 2257.692 kb on - strand, within Pf6N2E2_1904at 2257.692 kb on - strand, within Pf6N2E2_1904at 2257.692 kb on - strand, within Pf6N2E2_1904at 2257.754 kb on - strand, within Pf6N2E2_1904at 2258.002 kb on + strandat 2258.002 kb on + strandat 2258.002 kb on + strandat 2258.003 kb on - strandat 2258.003 kb on - strandat 2258.064 kb on - strandat 2258.174 kb on - strandat 2258.174 kb on - strandat 2258.175 kb on + strandat 2258.175 kb on + strandat 2258.176 kb on - strandat 2258.176 kb on - strandat 2258.475 kb on + strand, within Pf6N2E2_1905at 2258.475 kb on + strand, within Pf6N2E2_1905at 2258.476 kb on - strand, within Pf6N2E2_1905at 2258.476 kb on - strand, within Pf6N2E2_1905at 2258.476 kb on - strand, within Pf6N2E2_1905at 2258.516 kb on + strand, within Pf6N2E2_1905at 2258.516 kb on + strand, within Pf6N2E2_1905at 2258.528 kb on - strand, within Pf6N2E2_1905at 2258.550 kb on + strandat 2258.550 kb on + strandat 2258.551 kb on - strandat 2258.551 kb on - strandat 2258.551 kb on - strandat 2258.564 kb on + strandat 2258.581 kb on + strandat 2258.582 kb on - strandat 2258.582 kb on - strandat 2258.582 kb on - strandat 2258.582 kb on - strandat 2258.583 kb on - strandat 2258.691 kb on - strandat 2258.706 kb on + strandat 2258.762 kb on + strandat 2258.763 kb on - strandat 2258.763 kb on - strandat 2258.778 kb on - strandat 2258.781 kb on + strandat 2258.815 kb on - strandat 2258.898 kb on - strandat 2258.969 kb on + strandat 2258.970 kb on - strandat 2258.995 kb on - strandat 2259.009 kb on + strand, within Pf6N2E2_1906at 2259.051 kb on - strand, within Pf6N2E2_1906at 2259.051 kb on - strand, within Pf6N2E2_1906at 2259.051 kb on - strand, within Pf6N2E2_1906at 2259.076 kb on + strand, within Pf6N2E2_1906at 2259.076 kb on + strandat 2259.077 kb on - strand, within Pf6N2E2_1906at 2259.077 kb on - strand, within Pf6N2E2_1906at 2259.077 kb on - strand, within Pf6N2E2_1906at 2259.080 kb on + strand, within Pf6N2E2_1906at 2259.080 kb on + strand, within Pf6N2E2_1906at 2259.080 kb on + strand, within Pf6N2E2_1906at 2259.081 kb on - strand, within Pf6N2E2_1906at 2259.081 kb on - strand, within Pf6N2E2_1906at 2259.081 kb on - strand, within Pf6N2E2_1906at 2259.081 kb on - strand, within Pf6N2E2_1906at 2259.081 kb on - strand, within Pf6N2E2_1906at 2259.186 kb on + strand, within Pf6N2E2_1906at 2259.187 kb on - strand, within Pf6N2E2_1906at 2259.187 kb on - strand, within Pf6N2E2_1906at 2259.187 kb on - strand, within Pf6N2E2_1906at 2259.187 kb on - strand, within Pf6N2E2_1906at 2259.308 kb on - strand, within Pf6N2E2_1906at 2259.308 kb on - strand, within Pf6N2E2_1906at 2259.308 kb on - strand, within Pf6N2E2_1906at 2259.308 kb on - strand, within Pf6N2E2_1906at 2259.308 kb on - strand, within Pf6N2E2_1906at 2259.308 kb on - strand, within Pf6N2E2_1906at 2259.308 kb on - strand, within Pf6N2E2_1906at 2259.308 kb on - strand, within Pf6N2E2_1906at 2259.308 kb on - strand, within Pf6N2E2_1906at 2259.308 kb on - strand, within Pf6N2E2_1906at 2259.319 kb on + strand, within Pf6N2E2_1906at 2259.319 kb on + strand, within Pf6N2E2_1906at 2259.319 kb on + strand, within Pf6N2E2_1906at 2259.319 kb on + strand, within Pf6N2E2_1906at 2259.319 kb on + strand, within Pf6N2E2_1906at 2259.319 kb on + strand, within Pf6N2E2_1906at 2259.319 kb on + strand, within Pf6N2E2_1906at 2259.319 kb on + strand, within Pf6N2E2_1906at 2259.319 kb on + strand, within Pf6N2E2_1906at 2259.320 kb on - strand, within Pf6N2E2_1906at 2259.320 kb on - strand, within Pf6N2E2_1906at 2259.320 kb on - strand, within Pf6N2E2_1906at 2259.553 kb on - strand, within Pf6N2E2_1906

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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2,257,299 + Pf6N2E2_1904 0.69 +0.3
2,257,299 + Pf6N2E2_1904 0.69 -0.1
2,257,309 + Pf6N2E2_1904 0.69 +0.8
2,257,326 + Pf6N2E2_1904 0.70 -0.3
2,257,326 + Pf6N2E2_1904 0.70 -0.6
2,257,443 + Pf6N2E2_1904 0.75 -0.3
2,257,444 - Pf6N2E2_1904 0.75 -1.1
2,257,444 - Pf6N2E2_1904 0.75 +1.5
2,257,541 + Pf6N2E2_1904 0.80 +0.9
2,257,542 - Pf6N2E2_1904 0.80 -1.3
2,257,584 + Pf6N2E2_1904 0.81 -0.0
2,257,584 + Pf6N2E2_1904 0.81 +0.4
2,257,584 + Pf6N2E2_1904 0.81 -1.1
2,257,585 - Pf6N2E2_1904 0.81 +0.6
2,257,585 - Pf6N2E2_1904 0.81 +0.5
2,257,585 - Pf6N2E2_1904 0.81 +1.4
2,257,691 + Pf6N2E2_1904 0.86 -0.8
2,257,692 - Pf6N2E2_1904 0.86 +0.6
2,257,692 - Pf6N2E2_1904 0.86 +0.5
2,257,692 - Pf6N2E2_1904 0.86 +0.3
2,257,754 - Pf6N2E2_1904 0.89 +0.7
2,258,002 + +0.5
2,258,002 + +1.7
2,258,002 + -1.2
2,258,003 - +0.5
2,258,003 - -1.5
2,258,064 - +1.0
2,258,174 - +0.3
2,258,174 - +0.6
2,258,175 + +0.1
2,258,175 + -0.1
2,258,176 - +0.4
2,258,176 - +0.7
2,258,475 + Pf6N2E2_1905 0.77 -0.9
2,258,475 + Pf6N2E2_1905 0.77 -0.1
2,258,476 - Pf6N2E2_1905 0.77 -0.9
2,258,476 - Pf6N2E2_1905 0.77 -0.6
2,258,476 - Pf6N2E2_1905 0.77 +0.1
2,258,516 + Pf6N2E2_1905 0.86 -0.5
2,258,516 + Pf6N2E2_1905 0.86 -0.4
2,258,528 - Pf6N2E2_1905 0.89 -0.3
2,258,550 + -0.3
2,258,550 + -0.5
2,258,551 - -0.5
2,258,551 - +1.6
2,258,551 - -1.3
2,258,564 + -0.4
2,258,581 + +0.0
2,258,582 - -0.1
2,258,582 - +0.8
2,258,582 - +0.3
2,258,582 - -1.1
2,258,583 - -1.1
2,258,691 - -0.1
2,258,706 + +0.5
2,258,762 + +0.0
2,258,763 - +0.5
2,258,763 - -0.2
2,258,778 - +1.1
2,258,781 + -0.6
2,258,815 - +0.5
2,258,898 - -0.6
2,258,969 + -1.5
2,258,970 - -0.2
2,258,995 - +0.5
2,259,009 + Pf6N2E2_1906 0.11 -2.1
2,259,051 - Pf6N2E2_1906 0.14 +0.2
2,259,051 - Pf6N2E2_1906 0.14 -0.4
2,259,051 - Pf6N2E2_1906 0.14 -0.9
2,259,076 + Pf6N2E2_1906 0.15 -2.8
2,259,076 + +0.9
2,259,077 - Pf6N2E2_1906 0.16 -0.9
2,259,077 - Pf6N2E2_1906 0.16 -0.5
2,259,077 - Pf6N2E2_1906 0.16 -0.1
2,259,080 + Pf6N2E2_1906 0.16 +0.1
2,259,080 + Pf6N2E2_1906 0.16 +0.4
2,259,080 + Pf6N2E2_1906 0.16 +0.7
2,259,081 - Pf6N2E2_1906 0.16 -0.1
2,259,081 - Pf6N2E2_1906 0.16 +0.9
2,259,081 - Pf6N2E2_1906 0.16 -0.7
2,259,081 - Pf6N2E2_1906 0.16 -0.5
2,259,081 - Pf6N2E2_1906 0.16 +0.2
2,259,186 + Pf6N2E2_1906 0.23 -0.5
2,259,187 - Pf6N2E2_1906 0.23 -1.5
2,259,187 - Pf6N2E2_1906 0.23 -0.5
2,259,187 - Pf6N2E2_1906 0.23 +0.5
2,259,187 - Pf6N2E2_1906 0.23 -0.8
2,259,308 - Pf6N2E2_1906 0.31 -0.5
2,259,308 - Pf6N2E2_1906 0.31 -1.1
2,259,308 - Pf6N2E2_1906 0.31 -0.7
2,259,308 - Pf6N2E2_1906 0.31 +0.2
2,259,308 - Pf6N2E2_1906 0.31 +1.6
2,259,308 - Pf6N2E2_1906 0.31 +0.2
2,259,308 - Pf6N2E2_1906 0.31 +0.3
2,259,308 - Pf6N2E2_1906 0.31 -1.4
2,259,308 - Pf6N2E2_1906 0.31 +0.3
2,259,308 - Pf6N2E2_1906 0.31 +0.9
2,259,319 + Pf6N2E2_1906 0.32 +0.1
2,259,319 + Pf6N2E2_1906 0.32 +0.6
2,259,319 + Pf6N2E2_1906 0.32 -0.6
2,259,319 + Pf6N2E2_1906 0.32 -0.8
2,259,319 + Pf6N2E2_1906 0.32 -0.6
2,259,319 + Pf6N2E2_1906 0.32 -0.1
2,259,319 + Pf6N2E2_1906 0.32 +0.7
2,259,319 + Pf6N2E2_1906 0.32 +1.1
2,259,319 + Pf6N2E2_1906 0.32 -0.9
2,259,320 - Pf6N2E2_1906 0.32 -1.0
2,259,320 - Pf6N2E2_1906 0.32 +0.5
2,259,320 - Pf6N2E2_1906 0.32 +0.7
2,259,553 - Pf6N2E2_1906 0.48 -0.5

Or see this region's nucleotide sequence