Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1848

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1847 and Pf6N2E2_1848 overlap by 27 nucleotidesPf6N2E2_1848 and Pf6N2E2_1849 are separated by 272 nucleotides Pf6N2E2_1847 - FIG067310: hypothetical protein, at 2,186,168 to 2,187,589 _1847 Pf6N2E2_1848 - hypothetical protein, at 2,187,563 to 2,187,982 _1848 Pf6N2E2_1849 - FIG002188: hypothetical protein, at 2,188,255 to 2,189,619 _1849 Position (kb) 2187 2188Strain fitness (log2 ratio) -3 -2 -1 0 1at 2186.587 kb on - strand, within Pf6N2E2_1847at 2186.587 kb on - strand, within Pf6N2E2_1847at 2186.593 kb on - strand, within Pf6N2E2_1847at 2186.593 kb on - strand, within Pf6N2E2_1847at 2186.625 kb on + strand, within Pf6N2E2_1847at 2186.625 kb on + strand, within Pf6N2E2_1847at 2186.626 kb on - strand, within Pf6N2E2_1847at 2186.638 kb on + strand, within Pf6N2E2_1847at 2186.728 kb on + strand, within Pf6N2E2_1847at 2186.728 kb on + strand, within Pf6N2E2_1847at 2186.770 kb on + strand, within Pf6N2E2_1847at 2186.770 kb on + strand, within Pf6N2E2_1847at 2186.770 kb on + strand, within Pf6N2E2_1847at 2186.771 kb on - strand, within Pf6N2E2_1847at 2186.850 kb on + strand, within Pf6N2E2_1847at 2186.938 kb on - strand, within Pf6N2E2_1847at 2186.950 kb on - strand, within Pf6N2E2_1847at 2186.950 kb on - strand, within Pf6N2E2_1847at 2187.102 kb on + strand, within Pf6N2E2_1847at 2187.106 kb on + strand, within Pf6N2E2_1847at 2187.147 kb on + strand, within Pf6N2E2_1847at 2187.147 kb on + strand, within Pf6N2E2_1847at 2187.194 kb on + strand, within Pf6N2E2_1847at 2187.280 kb on - strand, within Pf6N2E2_1847at 2187.321 kb on + strand, within Pf6N2E2_1847at 2187.322 kb on - strand, within Pf6N2E2_1847at 2187.328 kb on + strand, within Pf6N2E2_1847at 2187.328 kb on + strand, within Pf6N2E2_1847at 2187.329 kb on - strand, within Pf6N2E2_1847at 2187.445 kb on - strand, within Pf6N2E2_1847at 2187.445 kb on - strand, within Pf6N2E2_1847at 2187.522 kb on + strandat 2187.522 kb on + strandat 2187.698 kb on - strand, within Pf6N2E2_1848at 2187.736 kb on - strand, within Pf6N2E2_1848at 2187.767 kb on - strand, within Pf6N2E2_1848at 2187.767 kb on - strand, within Pf6N2E2_1848at 2187.767 kb on - strand, within Pf6N2E2_1848at 2187.884 kb on - strand, within Pf6N2E2_1848at 2187.907 kb on + strand, within Pf6N2E2_1848at 2187.907 kb on + strand, within Pf6N2E2_1848at 2187.908 kb on - strand, within Pf6N2E2_1848at 2187.911 kb on - strand, within Pf6N2E2_1848at 2187.926 kb on - strand, within Pf6N2E2_1848at 2187.975 kb on + strandat 2187.984 kb on + strandat 2187.984 kb on + strandat 2188.077 kb on + strandat 2188.078 kb on - strandat 2188.078 kb on - strandat 2188.141 kb on + strandat 2188.168 kb on + strandat 2188.210 kb on + strandat 2188.210 kb on + strandat 2188.211 kb on - strandat 2188.211 kb on - strandat 2188.246 kb on + strandat 2188.370 kb on + strandat 2188.370 kb on + strandat 2188.371 kb on - strandat 2188.371 kb on - strandat 2188.371 kb on - strandat 2188.371 kb on - strandat 2188.371 kb on - strandat 2188.427 kb on + strand, within Pf6N2E2_1849at 2188.427 kb on + strand, within Pf6N2E2_1849at 2188.428 kb on - strand, within Pf6N2E2_1849at 2188.433 kb on + strand, within Pf6N2E2_1849at 2188.433 kb on + strand, within Pf6N2E2_1849at 2188.433 kb on + strand, within Pf6N2E2_1849at 2188.433 kb on + strand, within Pf6N2E2_1849at 2188.433 kb on + strand, within Pf6N2E2_1849at 2188.433 kb on + strand, within Pf6N2E2_1849at 2188.433 kb on + strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.434 kb on - strand, within Pf6N2E2_1849at 2188.487 kb on + strand, within Pf6N2E2_1849at 2188.488 kb on - strand, within Pf6N2E2_1849at 2188.488 kb on - strand, within Pf6N2E2_1849at 2188.488 kb on - strand, within Pf6N2E2_1849at 2188.671 kb on - strand, within Pf6N2E2_1849at 2188.676 kb on + strand, within Pf6N2E2_1849at 2188.677 kb on - strand, within Pf6N2E2_1849at 2188.694 kb on + strand, within Pf6N2E2_1849at 2188.694 kb on + strand, within Pf6N2E2_1849at 2188.695 kb on - strand, within Pf6N2E2_1849at 2188.724 kb on + strand, within Pf6N2E2_1849at 2188.725 kb on - strand, within Pf6N2E2_1849at 2188.814 kb on + strand, within Pf6N2E2_1849at 2188.815 kb on - strand, within Pf6N2E2_1849

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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2,186,587 - Pf6N2E2_1847 0.29 +0.7
2,186,587 - Pf6N2E2_1847 0.29 -0.1
2,186,593 - Pf6N2E2_1847 0.30 -1.4
2,186,593 - Pf6N2E2_1847 0.30 -0.0
2,186,625 + Pf6N2E2_1847 0.32 +1.0
2,186,625 + Pf6N2E2_1847 0.32 +0.0
2,186,626 - Pf6N2E2_1847 0.32 +1.0
2,186,638 + Pf6N2E2_1847 0.33 +0.3
2,186,728 + Pf6N2E2_1847 0.39 -0.7
2,186,728 + Pf6N2E2_1847 0.39 +0.1
2,186,770 + Pf6N2E2_1847 0.42 +0.3
2,186,770 + Pf6N2E2_1847 0.42 -0.2
2,186,770 + Pf6N2E2_1847 0.42 +1.3
2,186,771 - Pf6N2E2_1847 0.42 +0.2
2,186,850 + Pf6N2E2_1847 0.48 -0.7
2,186,938 - Pf6N2E2_1847 0.54 -0.7
2,186,950 - Pf6N2E2_1847 0.55 +0.3
2,186,950 - Pf6N2E2_1847 0.55 -0.1
2,187,102 + Pf6N2E2_1847 0.66 +1.6
2,187,106 + Pf6N2E2_1847 0.66 +0.0
2,187,147 + Pf6N2E2_1847 0.69 -0.3
2,187,147 + Pf6N2E2_1847 0.69 +0.4
2,187,194 + Pf6N2E2_1847 0.72 +0.6
2,187,280 - Pf6N2E2_1847 0.78 -0.7
2,187,321 + Pf6N2E2_1847 0.81 +0.9
2,187,322 - Pf6N2E2_1847 0.81 -0.6
2,187,328 + Pf6N2E2_1847 0.82 -0.1
2,187,328 + Pf6N2E2_1847 0.82 -0.0
2,187,329 - Pf6N2E2_1847 0.82 -0.7
2,187,445 - Pf6N2E2_1847 0.90 +0.5
2,187,445 - Pf6N2E2_1847 0.90 -0.1
2,187,522 + -0.0
2,187,522 + +0.1
2,187,698 - Pf6N2E2_1848 0.32 +0.1
2,187,736 - Pf6N2E2_1848 0.41 -0.4
2,187,767 - Pf6N2E2_1848 0.49 -1.0
2,187,767 - Pf6N2E2_1848 0.49 -1.7
2,187,767 - Pf6N2E2_1848 0.49 -0.7
2,187,884 - Pf6N2E2_1848 0.76 +0.5
2,187,907 + Pf6N2E2_1848 0.82 +0.0
2,187,907 + Pf6N2E2_1848 0.82 +0.3
2,187,908 - Pf6N2E2_1848 0.82 -2.5
2,187,911 - Pf6N2E2_1848 0.83 -2.2
2,187,926 - Pf6N2E2_1848 0.86 -2.4
2,187,975 + -0.4
2,187,984 + -0.0
2,187,984 + +0.5
2,188,077 + +0.6
2,188,078 - -0.4
2,188,078 - -0.3
2,188,141 + -1.6
2,188,168 + +0.2
2,188,210 + -0.5
2,188,210 + +0.7
2,188,211 - -0.7
2,188,211 - +0.8
2,188,246 + -0.1
2,188,370 + -1.4
2,188,370 + +0.5
2,188,371 - -1.0
2,188,371 - +0.5
2,188,371 - -0.6
2,188,371 - +0.1
2,188,371 - +0.2
2,188,427 + Pf6N2E2_1849 0.13 -0.3
2,188,427 + Pf6N2E2_1849 0.13 +0.4
2,188,428 - Pf6N2E2_1849 0.13 -1.3
2,188,433 + Pf6N2E2_1849 0.13 +0.3
2,188,433 + Pf6N2E2_1849 0.13 +0.9
2,188,433 + Pf6N2E2_1849 0.13 -0.1
2,188,433 + Pf6N2E2_1849 0.13 -0.6
2,188,433 + Pf6N2E2_1849 0.13 +1.1
2,188,433 + Pf6N2E2_1849 0.13 +1.6
2,188,433 + Pf6N2E2_1849 0.13 -0.2
2,188,434 - Pf6N2E2_1849 0.13 -2.8
2,188,434 - Pf6N2E2_1849 0.13 -0.5
2,188,434 - Pf6N2E2_1849 0.13 -0.5
2,188,434 - Pf6N2E2_1849 0.13 +0.3
2,188,434 - Pf6N2E2_1849 0.13 -0.1
2,188,434 - Pf6N2E2_1849 0.13 +0.5
2,188,434 - Pf6N2E2_1849 0.13 +0.5
2,188,434 - Pf6N2E2_1849 0.13 -0.4
2,188,434 - Pf6N2E2_1849 0.13 -0.7
2,188,434 - Pf6N2E2_1849 0.13 +1.1
2,188,434 - Pf6N2E2_1849 0.13 +0.9
2,188,487 + Pf6N2E2_1849 0.17 +0.6
2,188,488 - Pf6N2E2_1849 0.17 -0.1
2,188,488 - Pf6N2E2_1849 0.17 +0.3
2,188,488 - Pf6N2E2_1849 0.17 +0.2
2,188,671 - Pf6N2E2_1849 0.30 +1.3
2,188,676 + Pf6N2E2_1849 0.31 +0.5
2,188,677 - Pf6N2E2_1849 0.31 -0.5
2,188,694 + Pf6N2E2_1849 0.32 +0.1
2,188,694 + Pf6N2E2_1849 0.32 -0.5
2,188,695 - Pf6N2E2_1849 0.32 +0.7
2,188,724 + Pf6N2E2_1849 0.34 -1.5
2,188,725 - Pf6N2E2_1849 0.34 +0.3
2,188,814 + Pf6N2E2_1849 0.41 +1.1
2,188,815 - Pf6N2E2_1849 0.41 +0.2

Or see this region's nucleotide sequence