Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1847 and Pf6N2E2_1848 overlap by 27 nucleotides Pf6N2E2_1848 and Pf6N2E2_1849 are separated by 272 nucleotides
Pf6N2E2_1847 - FIG067310: hypothetical protein, at 2,186,168 to 2,187,589
_1847
Pf6N2E2_1848 - hypothetical protein, at 2,187,563 to 2,187,982
_1848
Pf6N2E2_1849 - FIG002188: hypothetical protein, at 2,188,255 to 2,189,619
_1849
Position (kb)
2187
2188 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2186.587 kb on - strand, within Pf6N2E2_1847 at 2186.587 kb on - strand, within Pf6N2E2_1847 at 2186.593 kb on - strand, within Pf6N2E2_1847 at 2186.593 kb on - strand, within Pf6N2E2_1847 at 2186.625 kb on + strand, within Pf6N2E2_1847 at 2186.625 kb on + strand, within Pf6N2E2_1847 at 2186.626 kb on - strand, within Pf6N2E2_1847 at 2186.638 kb on + strand, within Pf6N2E2_1847 at 2186.728 kb on + strand, within Pf6N2E2_1847 at 2186.728 kb on + strand, within Pf6N2E2_1847 at 2186.770 kb on + strand, within Pf6N2E2_1847 at 2186.770 kb on + strand, within Pf6N2E2_1847 at 2186.770 kb on + strand, within Pf6N2E2_1847 at 2186.771 kb on - strand, within Pf6N2E2_1847 at 2186.850 kb on + strand, within Pf6N2E2_1847 at 2186.938 kb on - strand, within Pf6N2E2_1847 at 2186.950 kb on - strand, within Pf6N2E2_1847 at 2186.950 kb on - strand, within Pf6N2E2_1847 at 2187.102 kb on + strand, within Pf6N2E2_1847 at 2187.106 kb on + strand, within Pf6N2E2_1847 at 2187.147 kb on + strand, within Pf6N2E2_1847 at 2187.147 kb on + strand, within Pf6N2E2_1847 at 2187.194 kb on + strand, within Pf6N2E2_1847 at 2187.280 kb on - strand, within Pf6N2E2_1847 at 2187.321 kb on + strand, within Pf6N2E2_1847 at 2187.322 kb on - strand, within Pf6N2E2_1847 at 2187.328 kb on + strand, within Pf6N2E2_1847 at 2187.328 kb on + strand, within Pf6N2E2_1847 at 2187.329 kb on - strand, within Pf6N2E2_1847 at 2187.445 kb on - strand, within Pf6N2E2_1847 at 2187.445 kb on - strand, within Pf6N2E2_1847 at 2187.522 kb on + strand at 2187.522 kb on + strand at 2187.698 kb on - strand, within Pf6N2E2_1848 at 2187.736 kb on - strand, within Pf6N2E2_1848 at 2187.767 kb on - strand, within Pf6N2E2_1848 at 2187.767 kb on - strand, within Pf6N2E2_1848 at 2187.767 kb on - strand, within Pf6N2E2_1848 at 2187.884 kb on - strand, within Pf6N2E2_1848 at 2187.907 kb on + strand, within Pf6N2E2_1848 at 2187.907 kb on + strand, within Pf6N2E2_1848 at 2187.908 kb on - strand, within Pf6N2E2_1848 at 2187.911 kb on - strand, within Pf6N2E2_1848 at 2187.926 kb on - strand, within Pf6N2E2_1848 at 2187.975 kb on + strand at 2187.984 kb on + strand at 2187.984 kb on + strand at 2188.077 kb on + strand at 2188.078 kb on - strand at 2188.078 kb on - strand at 2188.141 kb on + strand at 2188.168 kb on + strand at 2188.210 kb on + strand at 2188.210 kb on + strand at 2188.211 kb on - strand at 2188.211 kb on - strand at 2188.246 kb on + strand at 2188.370 kb on + strand at 2188.370 kb on + strand at 2188.371 kb on - strand at 2188.371 kb on - strand at 2188.371 kb on - strand at 2188.371 kb on - strand at 2188.371 kb on - strand at 2188.427 kb on + strand, within Pf6N2E2_1849 at 2188.427 kb on + strand, within Pf6N2E2_1849 at 2188.428 kb on - strand, within Pf6N2E2_1849 at 2188.433 kb on + strand, within Pf6N2E2_1849 at 2188.433 kb on + strand, within Pf6N2E2_1849 at 2188.433 kb on + strand, within Pf6N2E2_1849 at 2188.433 kb on + strand, within Pf6N2E2_1849 at 2188.433 kb on + strand, within Pf6N2E2_1849 at 2188.433 kb on + strand, within Pf6N2E2_1849 at 2188.433 kb on + strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.434 kb on - strand, within Pf6N2E2_1849 at 2188.487 kb on + strand, within Pf6N2E2_1849 at 2188.488 kb on - strand, within Pf6N2E2_1849 at 2188.488 kb on - strand, within Pf6N2E2_1849 at 2188.488 kb on - strand, within Pf6N2E2_1849 at 2188.671 kb on - strand, within Pf6N2E2_1849 at 2188.676 kb on + strand, within Pf6N2E2_1849 at 2188.677 kb on - strand, within Pf6N2E2_1849 at 2188.694 kb on + strand, within Pf6N2E2_1849 at 2188.694 kb on + strand, within Pf6N2E2_1849 at 2188.695 kb on - strand, within Pf6N2E2_1849 at 2188.724 kb on + strand, within Pf6N2E2_1849 at 2188.725 kb on - strand, within Pf6N2E2_1849 at 2188.814 kb on + strand, within Pf6N2E2_1849 at 2188.815 kb on - strand, within Pf6N2E2_1849
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 2,186,587 - Pf6N2E2_1847 0.29 +0.7 2,186,587 - Pf6N2E2_1847 0.29 -0.1 2,186,593 - Pf6N2E2_1847 0.30 -1.4 2,186,593 - Pf6N2E2_1847 0.30 -0.0 2,186,625 + Pf6N2E2_1847 0.32 +1.0 2,186,625 + Pf6N2E2_1847 0.32 +0.0 2,186,626 - Pf6N2E2_1847 0.32 +1.0 2,186,638 + Pf6N2E2_1847 0.33 +0.3 2,186,728 + Pf6N2E2_1847 0.39 -0.7 2,186,728 + Pf6N2E2_1847 0.39 +0.1 2,186,770 + Pf6N2E2_1847 0.42 +0.3 2,186,770 + Pf6N2E2_1847 0.42 -0.2 2,186,770 + Pf6N2E2_1847 0.42 +1.3 2,186,771 - Pf6N2E2_1847 0.42 +0.2 2,186,850 + Pf6N2E2_1847 0.48 -0.7 2,186,938 - Pf6N2E2_1847 0.54 -0.7 2,186,950 - Pf6N2E2_1847 0.55 +0.3 2,186,950 - Pf6N2E2_1847 0.55 -0.1 2,187,102 + Pf6N2E2_1847 0.66 +1.6 2,187,106 + Pf6N2E2_1847 0.66 +0.0 2,187,147 + Pf6N2E2_1847 0.69 -0.3 2,187,147 + Pf6N2E2_1847 0.69 +0.4 2,187,194 + Pf6N2E2_1847 0.72 +0.6 2,187,280 - Pf6N2E2_1847 0.78 -0.7 2,187,321 + Pf6N2E2_1847 0.81 +0.9 2,187,322 - Pf6N2E2_1847 0.81 -0.6 2,187,328 + Pf6N2E2_1847 0.82 -0.1 2,187,328 + Pf6N2E2_1847 0.82 -0.0 2,187,329 - Pf6N2E2_1847 0.82 -0.7 2,187,445 - Pf6N2E2_1847 0.90 +0.5 2,187,445 - Pf6N2E2_1847 0.90 -0.1 2,187,522 + -0.0 2,187,522 + +0.1 2,187,698 - Pf6N2E2_1848 0.32 +0.1 2,187,736 - Pf6N2E2_1848 0.41 -0.4 2,187,767 - Pf6N2E2_1848 0.49 -1.0 2,187,767 - Pf6N2E2_1848 0.49 -1.7 2,187,767 - Pf6N2E2_1848 0.49 -0.7 2,187,884 - Pf6N2E2_1848 0.76 +0.5 2,187,907 + Pf6N2E2_1848 0.82 +0.0 2,187,907 + Pf6N2E2_1848 0.82 +0.3 2,187,908 - Pf6N2E2_1848 0.82 -2.5 2,187,911 - Pf6N2E2_1848 0.83 -2.2 2,187,926 - Pf6N2E2_1848 0.86 -2.4 2,187,975 + -0.4 2,187,984 + -0.0 2,187,984 + +0.5 2,188,077 + +0.6 2,188,078 - -0.4 2,188,078 - -0.3 2,188,141 + -1.6 2,188,168 + +0.2 2,188,210 + -0.5 2,188,210 + +0.7 2,188,211 - -0.7 2,188,211 - +0.8 2,188,246 + -0.1 2,188,370 + -1.4 2,188,370 + +0.5 2,188,371 - -1.0 2,188,371 - +0.5 2,188,371 - -0.6 2,188,371 - +0.1 2,188,371 - +0.2 2,188,427 + Pf6N2E2_1849 0.13 -0.3 2,188,427 + Pf6N2E2_1849 0.13 +0.4 2,188,428 - Pf6N2E2_1849 0.13 -1.3 2,188,433 + Pf6N2E2_1849 0.13 +0.3 2,188,433 + Pf6N2E2_1849 0.13 +0.9 2,188,433 + Pf6N2E2_1849 0.13 -0.1 2,188,433 + Pf6N2E2_1849 0.13 -0.6 2,188,433 + Pf6N2E2_1849 0.13 +1.1 2,188,433 + Pf6N2E2_1849 0.13 +1.6 2,188,433 + Pf6N2E2_1849 0.13 -0.2 2,188,434 - Pf6N2E2_1849 0.13 -2.8 2,188,434 - Pf6N2E2_1849 0.13 -0.5 2,188,434 - Pf6N2E2_1849 0.13 -0.5 2,188,434 - Pf6N2E2_1849 0.13 +0.3 2,188,434 - Pf6N2E2_1849 0.13 -0.1 2,188,434 - Pf6N2E2_1849 0.13 +0.5 2,188,434 - Pf6N2E2_1849 0.13 +0.5 2,188,434 - Pf6N2E2_1849 0.13 -0.4 2,188,434 - Pf6N2E2_1849 0.13 -0.7 2,188,434 - Pf6N2E2_1849 0.13 +1.1 2,188,434 - Pf6N2E2_1849 0.13 +0.9 2,188,487 + Pf6N2E2_1849 0.17 +0.6 2,188,488 - Pf6N2E2_1849 0.17 -0.1 2,188,488 - Pf6N2E2_1849 0.17 +0.3 2,188,488 - Pf6N2E2_1849 0.17 +0.2 2,188,671 - Pf6N2E2_1849 0.30 +1.3 2,188,676 + Pf6N2E2_1849 0.31 +0.5 2,188,677 - Pf6N2E2_1849 0.31 -0.5 2,188,694 + Pf6N2E2_1849 0.32 +0.1 2,188,694 + Pf6N2E2_1849 0.32 -0.5 2,188,695 - Pf6N2E2_1849 0.32 +0.7 2,188,724 + Pf6N2E2_1849 0.34 -1.5 2,188,725 - Pf6N2E2_1849 0.34 +0.3 2,188,814 + Pf6N2E2_1849 0.41 +1.1 2,188,815 - Pf6N2E2_1849 0.41 +0.2
Or see this region's nucleotide sequence