Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1617

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1615 and Pf6N2E2_1616 are separated by 122 nucleotidesPf6N2E2_1616 and Pf6N2E2_1617 are separated by 1 nucleotidesPf6N2E2_1617 and Pf6N2E2_1618 are separated by 25 nucleotidesPf6N2E2_1618 and Pf6N2E2_1619 are separated by 44 nucleotides Pf6N2E2_1615 - Aldo-keto reductase, at 1,888,762 to 1,889,757 _1615 Pf6N2E2_1616 - hypothetical protein, at 1,889,880 to 1,890,638 _1616 Pf6N2E2_1617 - COG2199: FOG: GGDEF domain, at 1,890,640 to 1,891,980 _1617 Pf6N2E2_1618 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 1,892,006 to 1,892,740 _1618 Pf6N2E2_1619 - Glutathione S-transferase (EC 2.5.1.18), at 1,892,785 to 1,893,624 _1619 Position (kb) 1890 1891 1892Strain fitness (log2 ratio) -2 -1 0 1at 1889.830 kb on + strandat 1889.830 kb on + strandat 1889.831 kb on - strandat 1889.831 kb on - strandat 1889.833 kb on + strandat 1889.833 kb on + strandat 1889.833 kb on + strandat 1889.834 kb on - strandat 1889.834 kb on - strandat 1889.834 kb on - strandat 1889.866 kb on + strandat 1889.867 kb on - strandat 1889.871 kb on + strandat 1890.078 kb on - strand, within Pf6N2E2_1616at 1890.142 kb on - strand, within Pf6N2E2_1616at 1890.213 kb on + strand, within Pf6N2E2_1616at 1890.214 kb on - strand, within Pf6N2E2_1616at 1890.214 kb on - strand, within Pf6N2E2_1616at 1890.214 kb on - strand, within Pf6N2E2_1616at 1890.219 kb on + strand, within Pf6N2E2_1616at 1890.219 kb on + strand, within Pf6N2E2_1616at 1890.220 kb on - strand, within Pf6N2E2_1616at 1890.312 kb on + strand, within Pf6N2E2_1616at 1890.312 kb on + strand, within Pf6N2E2_1616at 1890.366 kb on + strand, within Pf6N2E2_1616at 1890.379 kb on - strand, within Pf6N2E2_1616at 1890.438 kb on + strand, within Pf6N2E2_1616at 1890.438 kb on + strand, within Pf6N2E2_1616at 1890.439 kb on - strand, within Pf6N2E2_1616at 1890.505 kb on + strand, within Pf6N2E2_1616at 1890.505 kb on + strand, within Pf6N2E2_1616at 1890.546 kb on - strand, within Pf6N2E2_1616at 1890.546 kb on - strand, within Pf6N2E2_1616at 1890.610 kb on - strandat 1890.610 kb on - strandat 1890.610 kb on - strandat 1890.634 kb on + strandat 1890.635 kb on - strandat 1890.714 kb on - strandat 1891.523 kb on - strand, within Pf6N2E2_1617at 1891.860 kb on - strandat 1892.003 kb on + strandat 1892.003 kb on + strandat 1892.003 kb on + strandat 1892.003 kb on + strandat 1892.003 kb on + strandat 1892.004 kb on - strandat 1892.004 kb on - strandat 1892.004 kb on - strandat 1892.004 kb on - strandat 1892.004 kb on - strandat 1892.005 kb on + strandat 1892.005 kb on + strandat 1892.005 kb on + strandat 1892.006 kb on - strandat 1892.006 kb on - strandat 1892.006 kb on - strandat 1892.006 kb on - strandat 1892.041 kb on - strandat 1892.105 kb on + strand, within Pf6N2E2_1618at 1892.106 kb on - strand, within Pf6N2E2_1618at 1892.112 kb on - strand, within Pf6N2E2_1618at 1892.246 kb on - strand, within Pf6N2E2_1618at 1892.292 kb on + strand, within Pf6N2E2_1618at 1892.293 kb on - strand, within Pf6N2E2_1618at 1892.313 kb on + strand, within Pf6N2E2_1618at 1892.337 kb on - strand, within Pf6N2E2_1618at 1892.353 kb on + strand, within Pf6N2E2_1618at 1892.354 kb on - strand, within Pf6N2E2_1618at 1892.394 kb on - strand, within Pf6N2E2_1618at 1892.394 kb on - strand, within Pf6N2E2_1618at 1892.433 kb on - strand, within Pf6N2E2_1618at 1892.597 kb on + strand, within Pf6N2E2_1618at 1892.598 kb on - strand, within Pf6N2E2_1618at 1892.598 kb on - strand, within Pf6N2E2_1618at 1892.598 kb on - strand, within Pf6N2E2_1618at 1892.598 kb on - strand, within Pf6N2E2_1618at 1892.801 kb on - strandat 1892.926 kb on + strand, within Pf6N2E2_1619at 1892.927 kb on - strand, within Pf6N2E2_1619

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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1,889,830 + -1.5
1,889,830 + +0.3
1,889,831 - -1.3
1,889,831 - -0.6
1,889,833 + +0.8
1,889,833 + +1.0
1,889,833 + -0.1
1,889,834 - +0.2
1,889,834 - +0.1
1,889,834 - +0.1
1,889,866 + -0.7
1,889,867 - -0.9
1,889,871 + +0.1
1,890,078 - Pf6N2E2_1616 0.26 +0.5
1,890,142 - Pf6N2E2_1616 0.35 -0.4
1,890,213 + Pf6N2E2_1616 0.44 +0.3
1,890,214 - Pf6N2E2_1616 0.44 +0.7
1,890,214 - Pf6N2E2_1616 0.44 -0.4
1,890,214 - Pf6N2E2_1616 0.44 -0.1
1,890,219 + Pf6N2E2_1616 0.45 +0.1
1,890,219 + Pf6N2E2_1616 0.45 -0.1
1,890,220 - Pf6N2E2_1616 0.45 +1.2
1,890,312 + Pf6N2E2_1616 0.57 -1.2
1,890,312 + Pf6N2E2_1616 0.57 -0.8
1,890,366 + Pf6N2E2_1616 0.64 -0.4
1,890,379 - Pf6N2E2_1616 0.66 +0.4
1,890,438 + Pf6N2E2_1616 0.74 +0.2
1,890,438 + Pf6N2E2_1616 0.74 +0.3
1,890,439 - Pf6N2E2_1616 0.74 +0.6
1,890,505 + Pf6N2E2_1616 0.82 +0.0
1,890,505 + Pf6N2E2_1616 0.82 +0.6
1,890,546 - Pf6N2E2_1616 0.88 +0.3
1,890,546 - Pf6N2E2_1616 0.88 +0.4
1,890,610 - -1.2
1,890,610 - +0.9
1,890,610 - +0.7
1,890,634 + +0.7
1,890,635 - -0.1
1,890,714 - +0.5
1,891,523 - Pf6N2E2_1617 0.66 -0.9
1,891,860 - -0.5
1,892,003 + +0.6
1,892,003 + +0.9
1,892,003 + -0.4
1,892,003 + -0.1
1,892,003 + +0.3
1,892,004 - -0.2
1,892,004 - -0.0
1,892,004 - -0.3
1,892,004 - +0.3
1,892,004 - +0.8
1,892,005 + +0.4
1,892,005 + -2.7
1,892,005 + -1.4
1,892,006 - -0.4
1,892,006 - -0.2
1,892,006 - +1.6
1,892,006 - +0.0
1,892,041 - +0.2
1,892,105 + Pf6N2E2_1618 0.13 +1.2
1,892,106 - Pf6N2E2_1618 0.14 -1.2
1,892,112 - Pf6N2E2_1618 0.14 +0.8
1,892,246 - Pf6N2E2_1618 0.33 +0.9
1,892,292 + Pf6N2E2_1618 0.39 +0.0
1,892,293 - Pf6N2E2_1618 0.39 +0.9
1,892,313 + Pf6N2E2_1618 0.42 -0.4
1,892,337 - Pf6N2E2_1618 0.45 +0.5
1,892,353 + Pf6N2E2_1618 0.47 +0.4
1,892,354 - Pf6N2E2_1618 0.47 +0.1
1,892,394 - Pf6N2E2_1618 0.53 -0.3
1,892,394 - Pf6N2E2_1618 0.53 +0.5
1,892,433 - Pf6N2E2_1618 0.58 -1.4
1,892,597 + Pf6N2E2_1618 0.80 -1.1
1,892,598 - Pf6N2E2_1618 0.81 +0.2
1,892,598 - Pf6N2E2_1618 0.81 +0.3
1,892,598 - Pf6N2E2_1618 0.81 -1.7
1,892,598 - Pf6N2E2_1618 0.81 -1.0
1,892,801 - -0.6
1,892,926 + Pf6N2E2_1619 0.17 -0.3
1,892,927 - Pf6N2E2_1619 0.17 +0.1

Or see this region's nucleotide sequence