Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1458

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1457 and Pf6N2E2_1458 are separated by 10 nucleotidesPf6N2E2_1458 and Pf6N2E2_1459 are separated by 106 nucleotides Pf6N2E2_1457 - Xylose ABC transporter, permease protein XylH, at 1,706,003 to 1,707,139 _1457 Pf6N2E2_1458 - probable transporter, LysE family, at 1,707,150 to 1,707,758 _1458 Pf6N2E2_1459 - Glycine cleavage system transcriptional activator GcvA, at 1,707,865 to 1,708,770 _1459 Position (kb) 1707 1708Strain fitness (log2 ratio) -1 0 1 2at 1706.351 kb on + strand, within Pf6N2E2_1457at 1706.351 kb on + strand, within Pf6N2E2_1457at 1706.352 kb on - strand, within Pf6N2E2_1457at 1706.466 kb on - strand, within Pf6N2E2_1457at 1706.480 kb on + strand, within Pf6N2E2_1457at 1706.480 kb on + strand, within Pf6N2E2_1457at 1706.608 kb on - strand, within Pf6N2E2_1457at 1706.651 kb on + strand, within Pf6N2E2_1457at 1706.651 kb on + strand, within Pf6N2E2_1457at 1706.654 kb on - strand, within Pf6N2E2_1457at 1706.715 kb on + strand, within Pf6N2E2_1457at 1706.716 kb on - strand, within Pf6N2E2_1457at 1706.723 kb on + strand, within Pf6N2E2_1457at 1706.808 kb on + strand, within Pf6N2E2_1457at 1706.808 kb on + strand, within Pf6N2E2_1457at 1706.808 kb on + strand, within Pf6N2E2_1457at 1706.809 kb on - strand, within Pf6N2E2_1457at 1706.987 kb on + strand, within Pf6N2E2_1457at 1706.987 kb on + strand, within Pf6N2E2_1457at 1706.988 kb on - strand, within Pf6N2E2_1457at 1706.988 kb on - strand, within Pf6N2E2_1457at 1707.060 kb on - strandat 1707.144 kb on + strandat 1707.144 kb on + strandat 1707.305 kb on + strand, within Pf6N2E2_1458at 1707.307 kb on + strand, within Pf6N2E2_1458at 1707.307 kb on + strand, within Pf6N2E2_1458at 1707.307 kb on + strand, within Pf6N2E2_1458at 1707.307 kb on + strand, within Pf6N2E2_1458at 1707.308 kb on - strand, within Pf6N2E2_1458at 1707.337 kb on + strand, within Pf6N2E2_1458at 1707.337 kb on + strand, within Pf6N2E2_1458at 1707.338 kb on - strand, within Pf6N2E2_1458at 1707.338 kb on - strand, within Pf6N2E2_1458at 1707.338 kb on - strand, within Pf6N2E2_1458at 1707.340 kb on + strandat 1707.512 kb on - strand, within Pf6N2E2_1458at 1707.536 kb on - strand, within Pf6N2E2_1458at 1707.764 kb on - strandat 1707.764 kb on - strandat 1707.845 kb on + strandat 1707.845 kb on + strandat 1707.846 kb on - strandat 1707.854 kb on - strandat 1707.986 kb on + strand, within Pf6N2E2_1459at 1707.986 kb on + strand, within Pf6N2E2_1459at 1707.987 kb on - strand, within Pf6N2E2_1459at 1707.987 kb on - strand, within Pf6N2E2_1459at 1708.292 kb on + strand, within Pf6N2E2_1459at 1708.293 kb on - strand, within Pf6N2E2_1459at 1708.293 kb on - strand, within Pf6N2E2_1459at 1708.293 kb on - strand, within Pf6N2E2_1459at 1708.361 kb on + strand, within Pf6N2E2_1459at 1708.361 kb on + strand, within Pf6N2E2_1459at 1708.361 kb on + strand, within Pf6N2E2_1459at 1708.361 kb on + strand, within Pf6N2E2_1459at 1708.362 kb on - strand, within Pf6N2E2_1459at 1708.362 kb on - strand, within Pf6N2E2_1459at 1708.362 kb on - strand, within Pf6N2E2_1459at 1708.672 kb on + strand, within Pf6N2E2_1459at 1708.673 kb on - strand, within Pf6N2E2_1459

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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1,706,351 + Pf6N2E2_1457 0.31 +0.3
1,706,351 + Pf6N2E2_1457 0.31 +0.1
1,706,352 - Pf6N2E2_1457 0.31 -0.3
1,706,466 - Pf6N2E2_1457 0.41 -0.4
1,706,480 + Pf6N2E2_1457 0.42 -0.9
1,706,480 + Pf6N2E2_1457 0.42 +0.7
1,706,608 - Pf6N2E2_1457 0.53 -0.1
1,706,651 + Pf6N2E2_1457 0.57 -0.3
1,706,651 + Pf6N2E2_1457 0.57 +0.7
1,706,654 - Pf6N2E2_1457 0.57 -0.0
1,706,715 + Pf6N2E2_1457 0.63 +0.2
1,706,716 - Pf6N2E2_1457 0.63 +1.2
1,706,723 + Pf6N2E2_1457 0.63 -1.4
1,706,808 + Pf6N2E2_1457 0.71 -0.5
1,706,808 + Pf6N2E2_1457 0.71 -0.9
1,706,808 + Pf6N2E2_1457 0.71 +1.9
1,706,809 - Pf6N2E2_1457 0.71 +0.9
1,706,987 + Pf6N2E2_1457 0.87 +1.9
1,706,987 + Pf6N2E2_1457 0.87 -0.5
1,706,988 - Pf6N2E2_1457 0.87 +0.9
1,706,988 - Pf6N2E2_1457 0.87 -1.5
1,707,060 - +0.6
1,707,144 + +0.5
1,707,144 + +0.2
1,707,305 + Pf6N2E2_1458 0.25 +2.2
1,707,307 + Pf6N2E2_1458 0.26 +0.7
1,707,307 + Pf6N2E2_1458 0.26 +0.4
1,707,307 + Pf6N2E2_1458 0.26 -0.3
1,707,307 + Pf6N2E2_1458 0.26 +0.8
1,707,308 - Pf6N2E2_1458 0.26 +0.5
1,707,337 + Pf6N2E2_1458 0.31 +1.9
1,707,337 + Pf6N2E2_1458 0.31 -0.3
1,707,338 - Pf6N2E2_1458 0.31 +1.3
1,707,338 - Pf6N2E2_1458 0.31 +0.1
1,707,338 - Pf6N2E2_1458 0.31 +1.2
1,707,340 + +2.3
1,707,512 - Pf6N2E2_1458 0.59 +0.4
1,707,536 - Pf6N2E2_1458 0.63 +0.7
1,707,764 - +0.2
1,707,764 - -1.0
1,707,845 + +1.2
1,707,845 + +0.7
1,707,846 - +0.1
1,707,854 - -0.1
1,707,986 + Pf6N2E2_1459 0.13 +0.1
1,707,986 + Pf6N2E2_1459 0.13 -0.6
1,707,987 - Pf6N2E2_1459 0.13 +0.2
1,707,987 - Pf6N2E2_1459 0.13 -0.8
1,708,292 + Pf6N2E2_1459 0.47 +1.3
1,708,293 - Pf6N2E2_1459 0.47 +1.3
1,708,293 - Pf6N2E2_1459 0.47 +1.5
1,708,293 - Pf6N2E2_1459 0.47 -0.4
1,708,361 + Pf6N2E2_1459 0.55 +0.2
1,708,361 + Pf6N2E2_1459 0.55 +1.0
1,708,361 + Pf6N2E2_1459 0.55 -1.4
1,708,361 + Pf6N2E2_1459 0.55 -0.6
1,708,362 - Pf6N2E2_1459 0.55 +0.4
1,708,362 - Pf6N2E2_1459 0.55 -0.2
1,708,362 - Pf6N2E2_1459 0.55 -0.4
1,708,672 + Pf6N2E2_1459 0.89 -0.1
1,708,673 - Pf6N2E2_1459 0.89 +0.4

Or see this region's nucleotide sequence