Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1437

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1435 and Pf6N2E2_1436 are separated by 40 nucleotidesPf6N2E2_1436 and Pf6N2E2_1437 are separated by 377 nucleotidesPf6N2E2_1437 and Pf6N2E2_1438 are separated by 527 nucleotides Pf6N2E2_1435 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase, at 1,684,697 to 1,685,794 _1435 Pf6N2E2_1436 - FMN reductase (EC 1.5.1.29), at 1,685,835 to 1,686,398 _1436 Pf6N2E2_1437 - Acyl-CoA dehydrogenase family protein, at 1,686,776 to 1,688,020 _1437 Pf6N2E2_1438 - Methyltransferase (EC 2.1.1.-), at 1,688,548 to 1,689,132 _1438 Position (kb) 1686 1687 1688 1689Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.795 kb on + strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.796 kb on - strandat 1685.801 kb on + strandat 1685.802 kb on - strandat 1685.802 kb on - strandat 1685.965 kb on + strand, within Pf6N2E2_1436at 1685.965 kb on + strand, within Pf6N2E2_1436at 1685.965 kb on + strand, within Pf6N2E2_1436at 1685.965 kb on + strand, within Pf6N2E2_1436at 1685.965 kb on + strand, within Pf6N2E2_1436at 1686.079 kb on - strand, within Pf6N2E2_1436at 1686.137 kb on - strand, within Pf6N2E2_1436at 1686.137 kb on - strand, within Pf6N2E2_1436at 1686.149 kb on - strand, within Pf6N2E2_1436at 1686.447 kb on - strandat 1686.483 kb on - strandat 1687.254 kb on - strand, within Pf6N2E2_1437at 1687.256 kb on + strand, within Pf6N2E2_1437at 1687.256 kb on + strand, within Pf6N2E2_1437at 1687.257 kb on - strand, within Pf6N2E2_1437at 1687.270 kb on + strand, within Pf6N2E2_1437at 1687.295 kb on + strand, within Pf6N2E2_1437at 1687.295 kb on + strand, within Pf6N2E2_1437at 1687.344 kb on + strand, within Pf6N2E2_1437at 1687.662 kb on - strand, within Pf6N2E2_1437at 1687.712 kb on + strand, within Pf6N2E2_1437at 1687.931 kb on + strandat 1687.931 kb on + strandat 1687.931 kb on + strandat 1687.932 kb on - strandat 1687.982 kb on + strandat 1687.983 kb on - strandat 1688.022 kb on + strandat 1688.022 kb on + strandat 1688.066 kb on + strandat 1688.067 kb on - strandat 1688.215 kb on + strandat 1688.216 kb on - strandat 1688.216 kb on - strandat 1688.282 kb on - strandat 1688.282 kb on - strandat 1688.298 kb on - strandat 1688.323 kb on - strandat 1688.323 kb on - strandat 1688.331 kb on + strandat 1688.332 kb on - strandat 1688.391 kb on - strandat 1688.391 kb on - strandat 1688.391 kb on - strandat 1688.396 kb on - strandat 1688.416 kb on + strandat 1688.416 kb on + strandat 1688.417 kb on - strandat 1688.417 kb on - strandat 1688.417 kb on - strandat 1688.450 kb on + strandat 1688.507 kb on + strandat 1688.508 kb on - strandat 1688.744 kb on + strand, within Pf6N2E2_1438at 1688.745 kb on - strand, within Pf6N2E2_1438at 1688.821 kb on - strand, within Pf6N2E2_1438at 1688.821 kb on - strand, within Pf6N2E2_1438at 1688.930 kb on - strand, within Pf6N2E2_1438at 1688.988 kb on + strand, within Pf6N2E2_1438at 1688.989 kb on - strand, within Pf6N2E2_1438

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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1,685,795 + +0.0
1,685,795 + +1.6
1,685,795 + -0.8
1,685,795 + -0.3
1,685,795 + +0.1
1,685,795 + -0.3
1,685,795 + -0.1
1,685,795 + +1.0
1,685,795 + +0.4
1,685,795 + +0.6
1,685,795 + +0.7
1,685,795 + +0.4
1,685,795 + +1.5
1,685,796 - +0.1
1,685,796 - +0.5
1,685,796 - +0.4
1,685,796 - +1.8
1,685,796 - -1.1
1,685,796 - +0.2
1,685,796 - +0.3
1,685,801 + +0.7
1,685,802 - -0.2
1,685,802 - -2.7
1,685,965 + Pf6N2E2_1436 0.23 +1.7
1,685,965 + Pf6N2E2_1436 0.23 +0.2
1,685,965 + Pf6N2E2_1436 0.23 +0.3
1,685,965 + Pf6N2E2_1436 0.23 +0.3
1,685,965 + Pf6N2E2_1436 0.23 -0.1
1,686,079 - Pf6N2E2_1436 0.43 +0.2
1,686,137 - Pf6N2E2_1436 0.54 -1.3
1,686,137 - Pf6N2E2_1436 0.54 +0.0
1,686,149 - Pf6N2E2_1436 0.56 -0.1
1,686,447 - +0.2
1,686,483 - +0.3
1,687,254 - Pf6N2E2_1437 0.38 -1.7
1,687,256 + Pf6N2E2_1437 0.39 -1.3
1,687,256 + Pf6N2E2_1437 0.39 -0.3
1,687,257 - Pf6N2E2_1437 0.39 -1.9
1,687,270 + Pf6N2E2_1437 0.40 +0.5
1,687,295 + Pf6N2E2_1437 0.42 +0.1
1,687,295 + Pf6N2E2_1437 0.42 -1.8
1,687,344 + Pf6N2E2_1437 0.46 -0.3
1,687,662 - Pf6N2E2_1437 0.71 -1.1
1,687,712 + Pf6N2E2_1437 0.75 -0.9
1,687,931 + -0.0
1,687,931 + +0.5
1,687,931 + +0.8
1,687,932 - -0.2
1,687,982 + +0.3
1,687,983 - +0.1
1,688,022 + -0.8
1,688,022 + +1.8
1,688,066 + +0.3
1,688,067 - -0.2
1,688,215 + +0.7
1,688,216 - +0.2
1,688,216 - -0.1
1,688,282 - +0.9
1,688,282 - +0.2
1,688,298 - +0.1
1,688,323 - -2.8
1,688,323 - -0.8
1,688,331 + +1.0
1,688,332 - -0.6
1,688,391 - +0.3
1,688,391 - +0.1
1,688,391 - -1.1
1,688,396 - +0.7
1,688,416 + +0.3
1,688,416 + -0.0
1,688,417 - -0.9
1,688,417 - -0.3
1,688,417 - -0.5
1,688,450 + -0.0
1,688,507 + +0.7
1,688,508 - -1.8
1,688,744 + Pf6N2E2_1438 0.34 +0.8
1,688,745 - Pf6N2E2_1438 0.34 -0.0
1,688,821 - Pf6N2E2_1438 0.47 -0.1
1,688,821 - Pf6N2E2_1438 0.47 -1.0
1,688,930 - Pf6N2E2_1438 0.65 +1.1
1,688,988 + Pf6N2E2_1438 0.75 -0.4
1,688,989 - Pf6N2E2_1438 0.75 -0.6

Or see this region's nucleotide sequence