Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1213

Experiment: Benzethonium chloride 0.02 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1212 and Pf6N2E2_1213 are separated by 79 nucleotidesPf6N2E2_1213 and Pf6N2E2_1214 are separated by 9 nucleotidesPf6N2E2_1214 and Pf6N2E2_1215 are separated by 168 nucleotides Pf6N2E2_1212 - Oxidoreductase, short chain dehydrogenase/reductase family, at 1,418,735 to 1,419,592 _1212 Pf6N2E2_1213 - hypothetical protein, at 1,419,672 to 1,419,794 _1213 Pf6N2E2_1214 - C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS, at 1,419,804 to 1,420,304 _1214 Pf6N2E2_1215 - probable membrane protein YPO2362, at 1,420,473 to 1,421,084 _1215 Position (kb) 1419 1420Strain fitness (log2 ratio) -1 0 1 2at 1418.834 kb on + strand, within Pf6N2E2_1212at 1418.834 kb on + strand, within Pf6N2E2_1212at 1418.834 kb on + strand, within Pf6N2E2_1212at 1419.095 kb on - strand, within Pf6N2E2_1212at 1419.154 kb on - strand, within Pf6N2E2_1212at 1419.175 kb on + strand, within Pf6N2E2_1212at 1419.175 kb on + strand, within Pf6N2E2_1212at 1419.175 kb on + strand, within Pf6N2E2_1212at 1419.176 kb on - strand, within Pf6N2E2_1212at 1419.305 kb on + strand, within Pf6N2E2_1212at 1419.306 kb on - strand, within Pf6N2E2_1212at 1419.306 kb on - strand, within Pf6N2E2_1212at 1419.512 kb on + strandat 1419.512 kb on + strandat 1419.542 kb on + strandat 1419.542 kb on + strandat 1419.542 kb on + strandat 1419.542 kb on + strandat 1419.542 kb on + strandat 1419.543 kb on - strandat 1419.543 kb on - strandat 1419.543 kb on - strandat 1419.585 kb on + strandat 1419.586 kb on - strandat 1419.688 kb on + strand, within Pf6N2E2_1213at 1419.688 kb on + strand, within Pf6N2E2_1213at 1419.688 kb on + strand, within Pf6N2E2_1213at 1419.689 kb on - strand, within Pf6N2E2_1213at 1419.689 kb on - strand, within Pf6N2E2_1213at 1420.157 kb on - strand, within Pf6N2E2_1214at 1420.276 kb on + strandat 1420.277 kb on - strandat 1420.277 kb on - strandat 1420.277 kb on - strandat 1420.528 kb on + strandat 1420.528 kb on + strandat 1420.528 kb on + strandat 1420.529 kb on - strandat 1420.529 kb on - strandat 1420.529 kb on - strandat 1420.529 kb on - strandat 1420.560 kb on + strand, within Pf6N2E2_1215at 1420.601 kb on - strand, within Pf6N2E2_1215at 1420.702 kb on - strand, within Pf6N2E2_1215at 1420.702 kb on - strand, within Pf6N2E2_1215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
remove
1,418,834 + Pf6N2E2_1212 0.12 +0.4
1,418,834 + Pf6N2E2_1212 0.12 -0.6
1,418,834 + Pf6N2E2_1212 0.12 +0.0
1,419,095 - Pf6N2E2_1212 0.42 +1.4
1,419,154 - Pf6N2E2_1212 0.49 +0.7
1,419,175 + Pf6N2E2_1212 0.51 -0.5
1,419,175 + Pf6N2E2_1212 0.51 +0.5
1,419,175 + Pf6N2E2_1212 0.51 +0.1
1,419,176 - Pf6N2E2_1212 0.51 -0.2
1,419,305 + Pf6N2E2_1212 0.66 -1.0
1,419,306 - Pf6N2E2_1212 0.67 +2.4
1,419,306 - Pf6N2E2_1212 0.67 -0.5
1,419,512 + -0.8
1,419,512 + +1.9
1,419,542 + +0.7
1,419,542 + +0.5
1,419,542 + +0.4
1,419,542 + -0.2
1,419,542 + -0.3
1,419,543 - -0.2
1,419,543 - +0.8
1,419,543 - -0.1
1,419,585 + +0.6
1,419,586 - +1.1
1,419,688 + Pf6N2E2_1213 0.13 +0.5
1,419,688 + Pf6N2E2_1213 0.13 -0.6
1,419,688 + Pf6N2E2_1213 0.13 -1.1
1,419,689 - Pf6N2E2_1213 0.14 -0.2
1,419,689 - Pf6N2E2_1213 0.14 -0.6
1,420,157 - Pf6N2E2_1214 0.70 -0.1
1,420,276 + -0.3
1,420,277 - +0.1
1,420,277 - +0.4
1,420,277 - -1.3
1,420,528 + +0.7
1,420,528 + +0.1
1,420,528 + +0.1
1,420,529 - +0.1
1,420,529 - +0.6
1,420,529 - -0.9
1,420,529 - -0.7
1,420,560 + Pf6N2E2_1215 0.14 +0.4
1,420,601 - Pf6N2E2_1215 0.21 -0.2
1,420,702 - Pf6N2E2_1215 0.37 -0.2
1,420,702 - Pf6N2E2_1215 0.37 -0.9

Or see this region's nucleotide sequence