Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1116

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1114 and Pf6N2E2_1115 overlap by 1 nucleotidesPf6N2E2_1115 and Pf6N2E2_1116 are separated by 150 nucleotidesPf6N2E2_1116 and Pf6N2E2_1117 are separated by 310 nucleotides Pf6N2E2_1114 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 1,306,473 to 1,309,034 _1114 Pf6N2E2_1115 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 1,309,034 to 1,309,420 _1115 Pf6N2E2_1116 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205), at 1,309,571 to 1,310,011 _1116 Pf6N2E2_1117 - Mobile element protein, at 1,310,322 to 1,311,590 _1117 Position (kb) 1309 1310 1311Strain fitness (log2 ratio) -1 0 1at 1308.684 kb on + strand, within Pf6N2E2_1114at 1308.708 kb on + strand, within Pf6N2E2_1114at 1308.708 kb on + strand, within Pf6N2E2_1114at 1308.708 kb on + strand, within Pf6N2E2_1114at 1308.709 kb on - strand, within Pf6N2E2_1114at 1308.709 kb on - strand, within Pf6N2E2_1114at 1308.778 kb on - strandat 1308.778 kb on - strandat 1309.058 kb on - strandat 1309.058 kb on - strandat 1309.178 kb on + strand, within Pf6N2E2_1115at 1309.179 kb on - strand, within Pf6N2E2_1115at 1309.179 kb on - strand, within Pf6N2E2_1115at 1309.208 kb on + strand, within Pf6N2E2_1115at 1309.208 kb on + strand, within Pf6N2E2_1115at 1309.307 kb on + strand, within Pf6N2E2_1115at 1309.308 kb on - strand, within Pf6N2E2_1115at 1309.308 kb on - strand, within Pf6N2E2_1115at 1309.308 kb on - strand, within Pf6N2E2_1115at 1309.308 kb on - strand, within Pf6N2E2_1115at 1309.542 kb on + strandat 1309.543 kb on - strandat 1309.543 kb on - strandat 1309.549 kb on + strandat 1309.550 kb on - strandat 1309.566 kb on - strandat 1309.746 kb on - strand, within Pf6N2E2_1116at 1309.804 kb on + strand, within Pf6N2E2_1116at 1309.805 kb on - strand, within Pf6N2E2_1116at 1309.994 kb on + strandat 1309.994 kb on + strandat 1309.994 kb on + strandat 1309.995 kb on - strandat 1309.995 kb on - strandat 1309.995 kb on - strandat 1309.995 kb on - strandat 1309.995 kb on - strandat 1309.995 kb on - strandat 1310.066 kb on - strandat 1310.066 kb on - strandat 1310.066 kb on - strandat 1310.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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1,308,684 + Pf6N2E2_1114 0.86 +0.4
1,308,708 + Pf6N2E2_1114 0.87 -0.0
1,308,708 + Pf6N2E2_1114 0.87 +0.7
1,308,708 + Pf6N2E2_1114 0.87 +0.4
1,308,709 - Pf6N2E2_1114 0.87 +1.7
1,308,709 - Pf6N2E2_1114 0.87 -0.3
1,308,778 - +0.1
1,308,778 - +0.3
1,309,058 - +1.6
1,309,058 - +0.1
1,309,178 + Pf6N2E2_1115 0.37 -0.0
1,309,179 - Pf6N2E2_1115 0.37 -0.1
1,309,179 - Pf6N2E2_1115 0.37 -0.0
1,309,208 + Pf6N2E2_1115 0.45 +0.2
1,309,208 + Pf6N2E2_1115 0.45 +0.3
1,309,307 + Pf6N2E2_1115 0.71 -0.3
1,309,308 - Pf6N2E2_1115 0.71 -0.4
1,309,308 - Pf6N2E2_1115 0.71 +0.6
1,309,308 - Pf6N2E2_1115 0.71 +0.1
1,309,308 - Pf6N2E2_1115 0.71 +1.1
1,309,542 + +0.5
1,309,543 - -0.2
1,309,543 - +0.5
1,309,549 + -0.5
1,309,550 - -0.3
1,309,566 - -1.6
1,309,746 - Pf6N2E2_1116 0.40 +0.3
1,309,804 + Pf6N2E2_1116 0.53 -0.7
1,309,805 - Pf6N2E2_1116 0.53 -0.9
1,309,994 + +1.0
1,309,994 + +0.0
1,309,994 + -0.5
1,309,995 - +0.4
1,309,995 - +0.2
1,309,995 - +0.4
1,309,995 - -0.4
1,309,995 - -0.0
1,309,995 - +1.0
1,310,066 - +0.8
1,310,066 - -0.0
1,310,066 - -0.3
1,310,066 - -0.3

Or see this region's nucleotide sequence