Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1103

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1102 and Pf6N2E2_1103 are separated by 11 nucleotidesPf6N2E2_1103 and Pf6N2E2_1104 overlap by 4 nucleotides Pf6N2E2_1102 - Aldehyde dehydrogenase A (EC 1.2.1.22), at 1,288,309 to 1,289,742 _1102 Pf6N2E2_1103 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 1,289,754 to 1,290,554 _1103 Pf6N2E2_1104 - Gluconate dehydratase (EC 4.2.1.39), at 1,290,551 to 1,291,750 _1104 Position (kb) 1289 1290 1291Strain fitness (log2 ratio) -2 -1 0 1at 1288.877 kb on + strand, within Pf6N2E2_1102at 1288.877 kb on + strand, within Pf6N2E2_1102at 1288.877 kb on + strand, within Pf6N2E2_1102at 1289.408 kb on + strand, within Pf6N2E2_1102at 1289.408 kb on + strand, within Pf6N2E2_1102at 1289.408 kb on + strand, within Pf6N2E2_1102at 1289.409 kb on - strand, within Pf6N2E2_1102at 1289.409 kb on - strand, within Pf6N2E2_1102at 1289.417 kb on + strand, within Pf6N2E2_1102at 1289.417 kb on + strand, within Pf6N2E2_1102at 1289.417 kb on + strand, within Pf6N2E2_1102at 1289.417 kb on + strand, within Pf6N2E2_1102at 1289.417 kb on + strand, within Pf6N2E2_1102at 1289.418 kb on - strand, within Pf6N2E2_1102at 1289.418 kb on - strand, within Pf6N2E2_1102at 1289.669 kb on + strandat 1289.669 kb on + strandat 1289.669 kb on + strandat 1289.669 kb on + strandat 1289.669 kb on + strandat 1289.670 kb on - strandat 1289.758 kb on + strandat 1289.759 kb on - strandat 1289.973 kb on + strand, within Pf6N2E2_1103at 1289.974 kb on - strand, within Pf6N2E2_1103at 1289.974 kb on - strand, within Pf6N2E2_1103at 1290.145 kb on + strand, within Pf6N2E2_1103at 1290.146 kb on - strand, within Pf6N2E2_1103at 1290.146 kb on - strand, within Pf6N2E2_1103at 1290.146 kb on - strand, within Pf6N2E2_1103at 1290.359 kb on - strand, within Pf6N2E2_1103at 1290.755 kb on - strand, within Pf6N2E2_1104at 1290.755 kb on - strand, within Pf6N2E2_1104at 1290.755 kb on - strand, within Pf6N2E2_1104at 1290.777 kb on + strand, within Pf6N2E2_1104at 1290.777 kb on + strand, within Pf6N2E2_1104at 1290.783 kb on + strand, within Pf6N2E2_1104at 1290.783 kb on + strand, within Pf6N2E2_1104at 1290.784 kb on - strand, within Pf6N2E2_1104at 1290.807 kb on - strand, within Pf6N2E2_1104at 1290.977 kb on + strand, within Pf6N2E2_1104at 1291.083 kb on + strand, within Pf6N2E2_1104at 1291.084 kb on - strand, within Pf6N2E2_1104at 1291.410 kb on + strand, within Pf6N2E2_1104at 1291.410 kb on + strand, within Pf6N2E2_1104at 1291.410 kb on + strand, within Pf6N2E2_1104at 1291.410 kb on + strand, within Pf6N2E2_1104at 1291.425 kb on + strand, within Pf6N2E2_1104at 1291.425 kb on + strand, within Pf6N2E2_1104at 1291.425 kb on + strand, within Pf6N2E2_1104at 1291.425 kb on + strand, within Pf6N2E2_1104at 1291.426 kb on - strand, within Pf6N2E2_1104at 1291.503 kb on + strand, within Pf6N2E2_1104

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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1,288,877 + Pf6N2E2_1102 0.40 -0.0
1,288,877 + Pf6N2E2_1102 0.40 +0.4
1,288,877 + Pf6N2E2_1102 0.40 +0.8
1,289,408 + Pf6N2E2_1102 0.77 +0.6
1,289,408 + Pf6N2E2_1102 0.77 +0.8
1,289,408 + Pf6N2E2_1102 0.77 +1.2
1,289,409 - Pf6N2E2_1102 0.77 +1.4
1,289,409 - Pf6N2E2_1102 0.77 -0.5
1,289,417 + Pf6N2E2_1102 0.77 +0.9
1,289,417 + Pf6N2E2_1102 0.77 -0.8
1,289,417 + Pf6N2E2_1102 0.77 +0.9
1,289,417 + Pf6N2E2_1102 0.77 -0.4
1,289,417 + Pf6N2E2_1102 0.77 +0.4
1,289,418 - Pf6N2E2_1102 0.77 -0.2
1,289,418 - Pf6N2E2_1102 0.77 +0.7
1,289,669 + -0.0
1,289,669 + -0.4
1,289,669 + -0.5
1,289,669 + +1.0
1,289,669 + +0.9
1,289,670 - +1.1
1,289,758 + +0.4
1,289,759 - +1.5
1,289,973 + Pf6N2E2_1103 0.27 -0.3
1,289,974 - Pf6N2E2_1103 0.27 -0.8
1,289,974 - Pf6N2E2_1103 0.27 +0.3
1,290,145 + Pf6N2E2_1103 0.49 -1.5
1,290,146 - Pf6N2E2_1103 0.49 -0.8
1,290,146 - Pf6N2E2_1103 0.49 +0.1
1,290,146 - Pf6N2E2_1103 0.49 +0.3
1,290,359 - Pf6N2E2_1103 0.76 -1.7
1,290,755 - Pf6N2E2_1104 0.17 +0.5
1,290,755 - Pf6N2E2_1104 0.17 -1.5
1,290,755 - Pf6N2E2_1104 0.17 -0.7
1,290,777 + Pf6N2E2_1104 0.19 +1.0
1,290,777 + Pf6N2E2_1104 0.19 -0.3
1,290,783 + Pf6N2E2_1104 0.19 -0.6
1,290,783 + Pf6N2E2_1104 0.19 -0.9
1,290,784 - Pf6N2E2_1104 0.19 -0.4
1,290,807 - Pf6N2E2_1104 0.21 +0.2
1,290,977 + Pf6N2E2_1104 0.35 -0.2
1,291,083 + Pf6N2E2_1104 0.44 +0.4
1,291,084 - Pf6N2E2_1104 0.44 +0.7
1,291,410 + Pf6N2E2_1104 0.72 +0.7
1,291,410 + Pf6N2E2_1104 0.72 +1.6
1,291,410 + Pf6N2E2_1104 0.72 -0.8
1,291,410 + Pf6N2E2_1104 0.72 -0.4
1,291,425 + Pf6N2E2_1104 0.73 -2.3
1,291,425 + Pf6N2E2_1104 0.73 -0.9
1,291,425 + Pf6N2E2_1104 0.73 -0.3
1,291,425 + Pf6N2E2_1104 0.73 -2.1
1,291,426 - Pf6N2E2_1104 0.73 +1.6
1,291,503 + Pf6N2E2_1104 0.79 +0.2

Or see this region's nucleotide sequence