Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1088 and Pf6N2E2_1089 are separated by 234 nucleotides Pf6N2E2_1089 and Pf6N2E2_1090 are separated by 100 nucleotides
Pf6N2E2_1088 - hypothetical protein, at 1,271,536 to 1,276,368
_1088
Pf6N2E2_1089 - Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1), at 1,276,603 to 1,277,634
_1089
Pf6N2E2_1090 - Transcriptional regulator for ferulate or vanillate catabolism, at 1,277,735 to 1,278,448
_1090
Position (kb)
1276
1277
1278 Strain fitness (log2 ratio)
-2
-1
0
1 at 1275.665 kb on + strand, within Pf6N2E2_1088 at 1275.817 kb on + strand, within Pf6N2E2_1088 at 1275.817 kb on + strand, within Pf6N2E2_1088 at 1275.818 kb on - strand, within Pf6N2E2_1088 at 1276.330 kb on + strand at 1276.343 kb on - strand at 1276.454 kb on + strand at 1276.454 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.458 kb on + strand at 1276.459 kb on - strand at 1276.459 kb on - strand at 1276.459 kb on - strand at 1276.459 kb on - strand at 1276.459 kb on - strand at 1276.542 kb on + strand at 1276.543 kb on - strand at 1276.563 kb on + strand at 1276.563 kb on + strand at 1276.574 kb on + strand at 1276.575 kb on - strand at 1276.787 kb on - strand, within Pf6N2E2_1089 at 1276.787 kb on - strand, within Pf6N2E2_1089 at 1277.017 kb on + strand, within Pf6N2E2_1089 at 1277.583 kb on + strand at 1277.584 kb on - strand at 1277.700 kb on + strand at 1277.700 kb on + strand at 1277.701 kb on - strand at 1277.701 kb on - strand at 1277.703 kb on + strand at 1277.703 kb on + strand at 1277.703 kb on + strand at 1277.704 kb on - strand at 1277.740 kb on + strand at 1277.741 kb on - strand at 1277.823 kb on + strand, within Pf6N2E2_1090 at 1278.092 kb on + strand, within Pf6N2E2_1090 at 1278.092 kb on + strand, within Pf6N2E2_1090 at 1278.093 kb on - strand, within Pf6N2E2_1090 at 1278.281 kb on + strand, within Pf6N2E2_1090 at 1278.281 kb on + strand, within Pf6N2E2_1090 at 1278.281 kb on + strand, within Pf6N2E2_1090 at 1278.282 kb on - strand, within Pf6N2E2_1090 at 1278.289 kb on + strand, within Pf6N2E2_1090 at 1278.289 kb on + strand, within Pf6N2E2_1090 at 1278.289 kb on + strand, within Pf6N2E2_1090 at 1278.289 kb on + strand, within Pf6N2E2_1090 at 1278.468 kb on + strand at 1278.468 kb on + strand at 1278.468 kb on + strand at 1278.468 kb on + strand at 1278.469 kb on - strand at 1278.537 kb on + strand at 1278.537 kb on + strand at 1278.538 kb on - strand at 1278.538 kb on - strand at 1278.550 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 1,275,665 + Pf6N2E2_1088 0.85 +0.2 1,275,817 + Pf6N2E2_1088 0.89 +0.6 1,275,817 + Pf6N2E2_1088 0.89 +1.1 1,275,818 - Pf6N2E2_1088 0.89 -0.6 1,276,330 + +0.2 1,276,343 - +0.1 1,276,454 + -0.1 1,276,454 + -0.2 1,276,458 + +1.0 1,276,458 + +0.3 1,276,458 + +0.6 1,276,458 + -0.1 1,276,458 + +0.3 1,276,458 + +0.1 1,276,458 + +0.8 1,276,459 - +0.1 1,276,459 - -0.4 1,276,459 - +0.3 1,276,459 - +0.7 1,276,459 - -0.7 1,276,542 + -1.3 1,276,543 - +1.7 1,276,563 + -2.0 1,276,563 + +0.6 1,276,574 + +0.6 1,276,575 - +0.5 1,276,787 - Pf6N2E2_1089 0.18 -0.9 1,276,787 - Pf6N2E2_1089 0.18 -0.9 1,277,017 + Pf6N2E2_1089 0.40 -0.3 1,277,583 + +0.2 1,277,584 - -0.6 1,277,700 + +0.1 1,277,700 + -0.4 1,277,701 - +0.6 1,277,701 - -1.3 1,277,703 + -1.7 1,277,703 + -1.6 1,277,703 + -1.2 1,277,704 - +0.6 1,277,740 + -0.4 1,277,741 - -0.7 1,277,823 + Pf6N2E2_1090 0.12 +1.0 1,278,092 + Pf6N2E2_1090 0.50 -1.0 1,278,092 + Pf6N2E2_1090 0.50 -1.9 1,278,093 - Pf6N2E2_1090 0.50 -0.7 1,278,281 + Pf6N2E2_1090 0.76 +0.5 1,278,281 + Pf6N2E2_1090 0.76 -0.1 1,278,281 + Pf6N2E2_1090 0.76 -0.9 1,278,282 - Pf6N2E2_1090 0.77 +0.8 1,278,289 + Pf6N2E2_1090 0.78 -0.7 1,278,289 + Pf6N2E2_1090 0.78 +1.0 1,278,289 + Pf6N2E2_1090 0.78 -0.3 1,278,289 + Pf6N2E2_1090 0.78 -0.8 1,278,468 + -0.3 1,278,468 + +0.2 1,278,468 + +0.4 1,278,468 + -1.1 1,278,469 - -2.1 1,278,537 + +0.0 1,278,537 + +0.6 1,278,538 - -0.3 1,278,538 - -0.2 1,278,550 + +0.4
Or see this region's nucleotide sequence