Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1089

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1088 and Pf6N2E2_1089 are separated by 234 nucleotidesPf6N2E2_1089 and Pf6N2E2_1090 are separated by 100 nucleotides Pf6N2E2_1088 - hypothetical protein, at 1,271,536 to 1,276,368 _1088 Pf6N2E2_1089 - Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1), at 1,276,603 to 1,277,634 _1089 Pf6N2E2_1090 - Transcriptional regulator for ferulate or vanillate catabolism, at 1,277,735 to 1,278,448 _1090 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -2 -1 0 1at 1275.665 kb on + strand, within Pf6N2E2_1088at 1275.817 kb on + strand, within Pf6N2E2_1088at 1275.817 kb on + strand, within Pf6N2E2_1088at 1275.818 kb on - strand, within Pf6N2E2_1088at 1276.330 kb on + strandat 1276.343 kb on - strandat 1276.454 kb on + strandat 1276.454 kb on + strandat 1276.458 kb on + strandat 1276.458 kb on + strandat 1276.458 kb on + strandat 1276.458 kb on + strandat 1276.458 kb on + strandat 1276.458 kb on + strandat 1276.458 kb on + strandat 1276.459 kb on - strandat 1276.459 kb on - strandat 1276.459 kb on - strandat 1276.459 kb on - strandat 1276.459 kb on - strandat 1276.542 kb on + strandat 1276.543 kb on - strandat 1276.563 kb on + strandat 1276.563 kb on + strandat 1276.574 kb on + strandat 1276.575 kb on - strandat 1276.787 kb on - strand, within Pf6N2E2_1089at 1276.787 kb on - strand, within Pf6N2E2_1089at 1277.017 kb on + strand, within Pf6N2E2_1089at 1277.583 kb on + strandat 1277.584 kb on - strandat 1277.700 kb on + strandat 1277.700 kb on + strandat 1277.701 kb on - strandat 1277.701 kb on - strandat 1277.703 kb on + strandat 1277.703 kb on + strandat 1277.703 kb on + strandat 1277.704 kb on - strandat 1277.740 kb on + strandat 1277.741 kb on - strandat 1277.823 kb on + strand, within Pf6N2E2_1090at 1278.092 kb on + strand, within Pf6N2E2_1090at 1278.092 kb on + strand, within Pf6N2E2_1090at 1278.093 kb on - strand, within Pf6N2E2_1090at 1278.281 kb on + strand, within Pf6N2E2_1090at 1278.281 kb on + strand, within Pf6N2E2_1090at 1278.281 kb on + strand, within Pf6N2E2_1090at 1278.282 kb on - strand, within Pf6N2E2_1090at 1278.289 kb on + strand, within Pf6N2E2_1090at 1278.289 kb on + strand, within Pf6N2E2_1090at 1278.289 kb on + strand, within Pf6N2E2_1090at 1278.289 kb on + strand, within Pf6N2E2_1090at 1278.468 kb on + strandat 1278.468 kb on + strandat 1278.468 kb on + strandat 1278.468 kb on + strandat 1278.469 kb on - strandat 1278.537 kb on + strandat 1278.537 kb on + strandat 1278.538 kb on - strandat 1278.538 kb on - strandat 1278.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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1,275,665 + Pf6N2E2_1088 0.85 +0.2
1,275,817 + Pf6N2E2_1088 0.89 +0.6
1,275,817 + Pf6N2E2_1088 0.89 +1.1
1,275,818 - Pf6N2E2_1088 0.89 -0.6
1,276,330 + +0.2
1,276,343 - +0.1
1,276,454 + -0.1
1,276,454 + -0.2
1,276,458 + +1.0
1,276,458 + +0.3
1,276,458 + +0.6
1,276,458 + -0.1
1,276,458 + +0.3
1,276,458 + +0.1
1,276,458 + +0.8
1,276,459 - +0.1
1,276,459 - -0.4
1,276,459 - +0.3
1,276,459 - +0.7
1,276,459 - -0.7
1,276,542 + -1.3
1,276,543 - +1.7
1,276,563 + -2.0
1,276,563 + +0.6
1,276,574 + +0.6
1,276,575 - +0.5
1,276,787 - Pf6N2E2_1089 0.18 -0.9
1,276,787 - Pf6N2E2_1089 0.18 -0.9
1,277,017 + Pf6N2E2_1089 0.40 -0.3
1,277,583 + +0.2
1,277,584 - -0.6
1,277,700 + +0.1
1,277,700 + -0.4
1,277,701 - +0.6
1,277,701 - -1.3
1,277,703 + -1.7
1,277,703 + -1.6
1,277,703 + -1.2
1,277,704 - +0.6
1,277,740 + -0.4
1,277,741 - -0.7
1,277,823 + Pf6N2E2_1090 0.12 +1.0
1,278,092 + Pf6N2E2_1090 0.50 -1.0
1,278,092 + Pf6N2E2_1090 0.50 -1.9
1,278,093 - Pf6N2E2_1090 0.50 -0.7
1,278,281 + Pf6N2E2_1090 0.76 +0.5
1,278,281 + Pf6N2E2_1090 0.76 -0.1
1,278,281 + Pf6N2E2_1090 0.76 -0.9
1,278,282 - Pf6N2E2_1090 0.77 +0.8
1,278,289 + Pf6N2E2_1090 0.78 -0.7
1,278,289 + Pf6N2E2_1090 0.78 +1.0
1,278,289 + Pf6N2E2_1090 0.78 -0.3
1,278,289 + Pf6N2E2_1090 0.78 -0.8
1,278,468 + -0.3
1,278,468 + +0.2
1,278,468 + +0.4
1,278,468 + -1.1
1,278,469 - -2.1
1,278,537 + +0.0
1,278,537 + +0.6
1,278,538 - -0.3
1,278,538 - -0.2
1,278,550 + +0.4

Or see this region's nucleotide sequence