Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_966 and Pf1N1B4_967 are separated by 124 nucleotides Pf1N1B4_967 and Pf1N1B4_968 overlap by 24 nucleotides
Pf1N1B4_966 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 1,095,266 to 1,096,402
_966
Pf1N1B4_967 - hypothetical protein, at 1,096,527 to 1,096,646
_967
Pf1N1B4_968 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,096,623 to 1,097,543
_968
Position (kb)
1096
1097 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1095.764 kb on + strand, within Pf1N1B4_966 at 1095.764 kb on + strand, within Pf1N1B4_966 at 1095.765 kb on - strand, within Pf1N1B4_966 at 1095.765 kb on - strand, within Pf1N1B4_966 at 1095.765 kb on - strand, within Pf1N1B4_966 at 1095.765 kb on - strand, within Pf1N1B4_966 at 1095.842 kb on + strand, within Pf1N1B4_966 at 1095.957 kb on + strand, within Pf1N1B4_966 at 1095.958 kb on - strand, within Pf1N1B4_966 at 1095.958 kb on - strand, within Pf1N1B4_966 at 1095.971 kb on + strand, within Pf1N1B4_966 at 1095.971 kb on + strand, within Pf1N1B4_966 at 1095.971 kb on + strand, within Pf1N1B4_966 at 1095.972 kb on - strand, within Pf1N1B4_966 at 1095.972 kb on - strand, within Pf1N1B4_966 at 1095.972 kb on - strand, within Pf1N1B4_966 at 1096.071 kb on + strand, within Pf1N1B4_966 at 1096.071 kb on + strand, within Pf1N1B4_966 at 1096.071 kb on + strand, within Pf1N1B4_966 at 1096.071 kb on + strand, within Pf1N1B4_966 at 1096.072 kb on - strand, within Pf1N1B4_966 at 1096.072 kb on - strand, within Pf1N1B4_966 at 1096.072 kb on - strand, within Pf1N1B4_966 at 1096.110 kb on + strand, within Pf1N1B4_966 at 1096.110 kb on + strand, within Pf1N1B4_966 at 1096.110 kb on + strand, within Pf1N1B4_966 at 1096.111 kb on - strand, within Pf1N1B4_966 at 1096.111 kb on - strand, within Pf1N1B4_966 at 1096.111 kb on - strand, within Pf1N1B4_966 at 1096.111 kb on - strand at 1096.111 kb on - strand, within Pf1N1B4_966 at 1096.111 kb on - strand, within Pf1N1B4_966 at 1096.194 kb on + strand, within Pf1N1B4_966 at 1096.222 kb on - strand, within Pf1N1B4_966 at 1096.290 kb on + strand at 1096.290 kb on + strand at 1096.290 kb on + strand at 1096.290 kb on + strand at 1096.290 kb on + strand at 1096.291 kb on - strand at 1096.291 kb on - strand at 1096.291 kb on - strand at 1096.291 kb on - strand at 1096.291 kb on - strand at 1096.448 kb on - strand at 1096.448 kb on - strand at 1096.448 kb on - strand at 1096.448 kb on - strand at 1096.529 kb on - strand at 1096.530 kb on + strand at 1096.531 kb on - strand at 1096.531 kb on - strand at 1096.531 kb on - strand at 1096.531 kb on - strand at 1096.536 kb on + strand at 1096.547 kb on + strand, within Pf1N1B4_967 at 1096.548 kb on - strand, within Pf1N1B4_967 at 1096.548 kb on - strand, within Pf1N1B4_967 at 1096.548 kb on - strand, within Pf1N1B4_967 at 1096.548 kb on - strand, within Pf1N1B4_967 at 1096.908 kb on - strand, within Pf1N1B4_968 at 1096.965 kb on + strand, within Pf1N1B4_968 at 1096.966 kb on - strand, within Pf1N1B4_968 at 1097.088 kb on + strand, within Pf1N1B4_968 at 1097.089 kb on - strand, within Pf1N1B4_968 at 1097.089 kb on - strand, within Pf1N1B4_968 at 1097.089 kb on - strand, within Pf1N1B4_968 at 1097.089 kb on - strand, within Pf1N1B4_968 at 1097.089 kb on - strand, within Pf1N1B4_968 at 1097.094 kb on + strand, within Pf1N1B4_968 at 1097.094 kb on + strand, within Pf1N1B4_968 at 1097.094 kb on + strand, within Pf1N1B4_968 at 1097.094 kb on + strand, within Pf1N1B4_968 at 1097.095 kb on - strand, within Pf1N1B4_968 at 1097.095 kb on - strand, within Pf1N1B4_968 at 1097.095 kb on - strand, within Pf1N1B4_968 at 1097.095 kb on - strand at 1097.172 kb on + strand, within Pf1N1B4_968 at 1097.172 kb on + strand, within Pf1N1B4_968 at 1097.172 kb on + strand, within Pf1N1B4_968 at 1097.423 kb on + strand, within Pf1N1B4_968 at 1097.439 kb on + strand, within Pf1N1B4_968 at 1097.439 kb on + strand, within Pf1N1B4_968 at 1097.440 kb on - strand, within Pf1N1B4_968 at 1097.440 kb on - strand, within Pf1N1B4_968 at 1097.541 kb on + strand at 1097.541 kb on + strand at 1097.542 kb on - strand at 1097.580 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 1,095,764 + Pf1N1B4_966 0.44 -0.5 1,095,764 + Pf1N1B4_966 0.44 -1.2 1,095,765 - Pf1N1B4_966 0.44 -0.5 1,095,765 - Pf1N1B4_966 0.44 +1.1 1,095,765 - Pf1N1B4_966 0.44 -2.2 1,095,765 - Pf1N1B4_966 0.44 +0.1 1,095,842 + Pf1N1B4_966 0.51 +1.0 1,095,957 + Pf1N1B4_966 0.61 -0.9 1,095,958 - Pf1N1B4_966 0.61 -1.5 1,095,958 - Pf1N1B4_966 0.61 +0.5 1,095,971 + Pf1N1B4_966 0.62 -1.7 1,095,971 + Pf1N1B4_966 0.62 -2.1 1,095,971 + Pf1N1B4_966 0.62 -0.5 1,095,972 - Pf1N1B4_966 0.62 -1.9 1,095,972 - Pf1N1B4_966 0.62 -1.5 1,095,972 - Pf1N1B4_966 0.62 -0.1 1,096,071 + Pf1N1B4_966 0.71 +0.1 1,096,071 + Pf1N1B4_966 0.71 +1.8 1,096,071 + Pf1N1B4_966 0.71 -1.9 1,096,071 + Pf1N1B4_966 0.71 -0.9 1,096,072 - Pf1N1B4_966 0.71 +0.4 1,096,072 - Pf1N1B4_966 0.71 -1.9 1,096,072 - Pf1N1B4_966 0.71 +1.9 1,096,110 + Pf1N1B4_966 0.74 +1.3 1,096,110 + Pf1N1B4_966 0.74 -1.9 1,096,110 + Pf1N1B4_966 0.74 +0.7 1,096,111 - Pf1N1B4_966 0.74 -0.3 1,096,111 - Pf1N1B4_966 0.74 +2.4 1,096,111 - Pf1N1B4_966 0.74 -0.9 1,096,111 - +2.4 1,096,111 - Pf1N1B4_966 0.74 -1.9 1,096,111 - Pf1N1B4_966 0.74 +0.1 1,096,194 + Pf1N1B4_966 0.82 +0.1 1,096,222 - Pf1N1B4_966 0.84 +1.1 1,096,290 + -0.9 1,096,290 + +0.7 1,096,290 + +1.7 1,096,290 + +0.8 1,096,290 + -1.9 1,096,291 - -0.8 1,096,291 - -1.2 1,096,291 - -0.6 1,096,291 - +0.9 1,096,291 - +1.4 1,096,448 - -0.5 1,096,448 - +1.7 1,096,448 - -2.0 1,096,448 - -1.5 1,096,529 - -0.6 1,096,530 + -0.5 1,096,531 - -0.9 1,096,531 - +3.3 1,096,531 - -1.1 1,096,531 - +1.5 1,096,536 + +0.5 1,096,547 + Pf1N1B4_967 0.17 -2.2 1,096,548 - Pf1N1B4_967 0.17 -1.9 1,096,548 - Pf1N1B4_967 0.17 -0.9 1,096,548 - Pf1N1B4_967 0.17 +0.5 1,096,548 - Pf1N1B4_967 0.17 -1.5 1,096,908 - Pf1N1B4_968 0.31 +1.1 1,096,965 + Pf1N1B4_968 0.37 -2.2 1,096,966 - Pf1N1B4_968 0.37 +0.1 1,097,088 + Pf1N1B4_968 0.50 +3.2 1,097,089 - Pf1N1B4_968 0.51 -1.5 1,097,089 - Pf1N1B4_968 0.51 +0.9 1,097,089 - Pf1N1B4_968 0.51 -2.2 1,097,089 - Pf1N1B4_968 0.51 +2.3 1,097,089 - Pf1N1B4_968 0.51 +2.4 1,097,094 + Pf1N1B4_968 0.51 -1.5 1,097,094 + Pf1N1B4_968 0.51 +0.1 1,097,094 + Pf1N1B4_968 0.51 -2.5 1,097,094 + Pf1N1B4_968 0.51 +2.4 1,097,095 - Pf1N1B4_968 0.51 -1.2 1,097,095 - Pf1N1B4_968 0.51 +0.3 1,097,095 - Pf1N1B4_968 0.51 -0.5 1,097,095 - -1.9 1,097,172 + Pf1N1B4_968 0.60 +0.1 1,097,172 + Pf1N1B4_968 0.60 -1.5 1,097,172 + Pf1N1B4_968 0.60 -1.5 1,097,423 + Pf1N1B4_968 0.87 +0.9 1,097,439 + Pf1N1B4_968 0.89 +1.9 1,097,439 + Pf1N1B4_968 0.89 -2.5 1,097,440 - Pf1N1B4_968 0.89 +1.8 1,097,440 - Pf1N1B4_968 0.89 +1.7 1,097,541 + -1.0 1,097,541 + +0.8 1,097,542 - -0.3 1,097,580 - +0.3
Or see this region's nucleotide sequence