Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_888 and Pf1N1B4_889 are separated by 129 nucleotides Pf1N1B4_889 and Pf1N1B4_890 are separated by 98 nucleotides Pf1N1B4_890 and Pf1N1B4_891 are separated by 171 nucleotides
Pf1N1B4_888 - Transglycosylase, Slt family, at 1,014,406 to 1,015,866
_888
Pf1N1B4_889 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 1,015,996 to 1,016,742
_889
Pf1N1B4_890 - DNA recombination and repair protein RecO, at 1,016,841 to 1,017,530
_890
Pf1N1B4_891 - GTP-binding protein Era, at 1,017,702 to 1,018,604
_891
Position (kb)
1016
1017
1018 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1015.864 kb on + strand at 1015.865 kb on - strand at 1015.865 kb on - strand at 1015.865 kb on - strand at 1016.760 kb on - strand at 1016.783 kb on + strand at 1016.783 kb on + strand at 1016.783 kb on + strand at 1016.783 kb on + strand at 1016.784 kb on - strand at 1016.784 kb on - strand at 1016.784 kb on - strand at 1016.784 kb on - strand at 1016.784 kb on - strand at 1016.828 kb on - strand at 1016.843 kb on - strand at 1016.849 kb on + strand at 1016.871 kb on + strand at 1016.872 kb on - strand at 1016.872 kb on - strand at 1016.872 kb on - strand at 1017.010 kb on + strand at 1017.010 kb on + strand, within Pf1N1B4_890 at 1017.011 kb on - strand, within Pf1N1B4_890 at 1017.011 kb on - strand, within Pf1N1B4_890 at 1017.039 kb on + strand, within Pf1N1B4_890 at 1017.039 kb on + strand, within Pf1N1B4_890 at 1017.040 kb on - strand, within Pf1N1B4_890 at 1017.040 kb on - strand at 1017.046 kb on + strand, within Pf1N1B4_890 at 1017.193 kb on + strand, within Pf1N1B4_890 at 1017.260 kb on - strand, within Pf1N1B4_890 at 1017.496 kb on + strand at 1017.497 kb on - strand at 1017.497 kb on - strand at 1017.565 kb on + strand at 1017.565 kb on + strand at 1017.565 kb on + strand at 1017.566 kb on - strand at 1017.566 kb on - strand at 1017.616 kb on + strand at 1017.617 kb on - strand at 1017.617 kb on - strand at 1017.641 kb on + strand at 1017.641 kb on + strand at 1017.642 kb on - strand at 1017.642 kb on - strand at 1017.680 kb on + strand at 1017.680 kb on + strand at 1017.681 kb on - strand at 1017.681 kb on - strand at 1017.703 kb on + strand at 1017.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 1,015,864 + -2.5 1,015,865 - -0.9 1,015,865 - -2.5 1,015,865 - -0.0 1,016,760 - +0.8 1,016,783 + -0.5 1,016,783 + +2.9 1,016,783 + -0.9 1,016,783 + +0.1 1,016,784 - -0.9 1,016,784 - -1.6 1,016,784 - -0.3 1,016,784 - -1.2 1,016,784 - -0.9 1,016,828 - +0.4 1,016,843 - +0.3 1,016,849 + -0.9 1,016,871 + -0.9 1,016,872 - -2.2 1,016,872 - +0.1 1,016,872 - -1.9 1,017,010 + +0.1 1,017,010 + Pf1N1B4_890 0.24 -1.7 1,017,011 - Pf1N1B4_890 0.25 +0.1 1,017,011 - Pf1N1B4_890 0.25 -1.9 1,017,039 + Pf1N1B4_890 0.29 -3.1 1,017,039 + Pf1N1B4_890 0.29 +0.1 1,017,040 - Pf1N1B4_890 0.29 -1.9 1,017,040 - -0.9 1,017,046 + Pf1N1B4_890 0.30 -2.7 1,017,193 + Pf1N1B4_890 0.51 -0.9 1,017,260 - Pf1N1B4_890 0.61 -1.9 1,017,496 + -5.2 1,017,497 - -2.9 1,017,497 - -0.5 1,017,565 + -2.2 1,017,565 + -2.2 1,017,565 + -3.6 1,017,566 - +1.1 1,017,566 - +1.2 1,017,616 + -2.2 1,017,617 - -0.9 1,017,617 - +0.7 1,017,641 + -1.5 1,017,641 + -1.2 1,017,642 - +1.4 1,017,642 - -0.6 1,017,680 + -0.9 1,017,680 + -0.9 1,017,681 - +0.5 1,017,681 - +0.6 1,017,703 + -2.2 1,017,704 - -0.9
Or see this region's nucleotide sequence