Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_886

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_885 and Pf1N1B4_886 are separated by 803 nucleotidesPf1N1B4_886 and Pf1N1B4_887 are separated by 19 nucleotides Pf1N1B4_885 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 1,008,597 to 1,009,100 _885 Pf1N1B4_886 - FIG137478: Hypothetical protein, at 1,009,904 to 1,010,215 _886 Pf1N1B4_887 - Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3), at 1,010,235 to 1,014,131 _887 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1008.998 kb on + strand, within Pf1N1B4_885at 1008.999 kb on - strand, within Pf1N1B4_885at 1009.103 kb on + strandat 1009.110 kb on + strandat 1009.110 kb on + strandat 1009.110 kb on + strandat 1009.111 kb on - strandat 1009.111 kb on - strandat 1009.111 kb on - strandat 1009.111 kb on - strandat 1009.111 kb on - strandat 1009.111 kb on - strandat 1009.111 kb on - strandat 1009.112 kb on + strandat 1009.112 kb on + strandat 1009.112 kb on + strandat 1009.112 kb on + strandat 1009.112 kb on + strandat 1009.113 kb on - strandat 1009.113 kb on - strandat 1009.113 kb on - strandat 1009.113 kb on - strandat 1009.113 kb on - strandat 1009.163 kb on + strandat 1009.163 kb on + strandat 1009.163 kb on + strandat 1009.163 kb on + strandat 1009.163 kb on + strandat 1009.163 kb on + strandat 1009.163 kb on + strandat 1009.163 kb on + strandat 1009.163 kb on + strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.164 kb on - strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.174 kb on + strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.175 kb on - strandat 1009.178 kb on + strandat 1009.178 kb on + strandat 1009.179 kb on - strandat 1009.179 kb on - strandat 1009.179 kb on - strandat 1009.179 kb on - strandat 1009.276 kb on - strandat 1009.309 kb on - strandat 1009.334 kb on + strandat 1009.368 kb on - strandat 1009.370 kb on + strandat 1009.371 kb on - strandat 1009.371 kb on - strandat 1009.371 kb on - strandat 1009.387 kb on - strandat 1009.387 kb on - strandat 1009.387 kb on - strandat 1009.387 kb on - strandat 1009.437 kb on + strandat 1009.437 kb on + strandat 1009.437 kb on + strandat 1009.438 kb on - strandat 1009.438 kb on - strandat 1009.438 kb on - strandat 1009.438 kb on - strandat 1009.450 kb on + strandat 1009.451 kb on - strandat 1009.451 kb on - strandat 1009.454 kb on + strandat 1009.464 kb on + strandat 1009.464 kb on + strandat 1009.464 kb on + strandat 1009.464 kb on + strandat 1009.464 kb on + strandat 1009.464 kb on + strandat 1009.464 kb on + strandat 1009.465 kb on - strandat 1009.465 kb on - strandat 1009.465 kb on - strandat 1009.465 kb on - strandat 1009.465 kb on - strandat 1009.465 kb on - strandat 1009.465 kb on - strandat 1009.465 kb on - strandat 1009.465 kb on - strandat 1009.516 kb on + strandat 1009.516 kb on + strandat 1009.516 kb on + strandat 1009.517 kb on - strandat 1009.517 kb on - strandat 1009.520 kb on + strandat 1009.520 kb on + strandat 1009.520 kb on + strandat 1009.520 kb on + strandat 1009.520 kb on + strandat 1009.521 kb on - strandat 1009.521 kb on - strandat 1009.521 kb on - strandat 1009.521 kb on - strandat 1009.521 kb on - strandat 1009.521 kb on - strandat 1009.521 kb on - strandat 1009.558 kb on - strandat 1009.558 kb on - strandat 1009.566 kb on + strandat 1009.622 kb on + strandat 1009.623 kb on - strandat 1009.638 kb on + strandat 1009.660 kb on + strandat 1009.660 kb on + strandat 1009.660 kb on + strandat 1009.660 kb on + strandat 1009.660 kb on + strandat 1009.660 kb on + strandat 1009.660 kb on + strandat 1009.660 kb on + strandat 1009.660 kb on + strandat 1009.661 kb on - strandat 1009.663 kb on + strandat 1009.677 kb on + strandat 1009.677 kb on + strandat 1009.677 kb on + strandat 1009.677 kb on + strandat 1009.677 kb on + strandat 1009.677 kb on + strandat 1009.677 kb on + strandat 1009.677 kb on + strandat 1009.678 kb on - strandat 1009.678 kb on - strandat 1009.678 kb on - strandat 1009.678 kb on - strandat 1009.678 kb on - strandat 1009.678 kb on - strandat 1009.678 kb on - strandat 1009.678 kb on - strandat 1009.679 kb on + strandat 1009.679 kb on + strandat 1009.679 kb on + strandat 1009.680 kb on - strandat 1009.680 kb on - strandat 1009.686 kb on + strandat 1009.687 kb on - strandat 1009.715 kb on + strandat 1009.715 kb on + strandat 1009.715 kb on + strandat 1009.715 kb on + strandat 1009.715 kb on + strandat 1009.715 kb on + strandat 1009.715 kb on + strandat 1009.715 kb on + strandat 1009.716 kb on - strandat 1009.716 kb on - strandat 1009.716 kb on - strandat 1009.716 kb on - strandat 1009.716 kb on - strandat 1009.716 kb on - strandat 1009.722 kb on + strandat 1009.723 kb on - strandat 1009.772 kb on + strandat 1009.772 kb on + strandat 1009.772 kb on + strandat 1009.772 kb on + strandat 1009.772 kb on + strandat 1009.772 kb on + strandat 1009.773 kb on - strandat 1009.925 kb on + strandat 1009.932 kb on + strandat 1010.124 kb on + strand, within Pf1N1B4_886at 1010.124 kb on + strandat 1010.124 kb on + strand, within Pf1N1B4_886at 1010.125 kb on - strand, within Pf1N1B4_886at 1010.125 kb on - strand, within Pf1N1B4_886at 1010.125 kb on - strand, within Pf1N1B4_886at 1010.125 kb on - strand, within Pf1N1B4_886at 1010.211 kb on + strandat 1010.211 kb on + strandat 1010.212 kb on - strandat 1010.212 kb on - strandat 1010.236 kb on + strandat 1010.236 kb on + strandat 1010.236 kb on + strandat 1010.237 kb on - strandat 1010.237 kb on - strandat 1010.237 kb on - strandat 1010.237 kb on - strandat 1010.237 kb on - strandat 1010.237 kb on - strandat 1010.237 kb on - strandat 1010.237 kb on - strandat 1010.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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1,008,998 + Pf1N1B4_885 0.80 +1.4
1,008,999 - Pf1N1B4_885 0.80 -2.1
1,009,103 + +0.5
1,009,110 + +0.0
1,009,110 + +0.1
1,009,110 + -2.2
1,009,111 - +0.1
1,009,111 - -0.3
1,009,111 - -1.3
1,009,111 - -0.9
1,009,111 - +0.1
1,009,111 - -2.2
1,009,111 - -0.9
1,009,112 + -1.7
1,009,112 + -0.5
1,009,112 + +0.8
1,009,112 + -0.5
1,009,112 + -0.3
1,009,113 - +0.1
1,009,113 - +0.5
1,009,113 - -0.9
1,009,113 - +0.1
1,009,113 - +1.1
1,009,163 + -2.5
1,009,163 + -1.9
1,009,163 + -1.5
1,009,163 + +0.4
1,009,163 + +0.7
1,009,163 + +1.1
1,009,163 + +1.8
1,009,163 + +0.4
1,009,163 + +0.1
1,009,164 - +0.1
1,009,164 - +0.1
1,009,164 - +1.1
1,009,164 - +1.5
1,009,164 - +1.7
1,009,164 - -0.2
1,009,164 - -2.2
1,009,164 - -0.9
1,009,164 - +0.1
1,009,164 - -0.9
1,009,164 - +1.1
1,009,164 - +0.6
1,009,164 - +0.6
1,009,164 - -0.9
1,009,174 + +0.5
1,009,174 + +0.5
1,009,174 + -0.8
1,009,174 + -0.1
1,009,174 + +1.4
1,009,174 + -0.3
1,009,174 + +1.0
1,009,174 + -0.2
1,009,174 + -0.5
1,009,174 + +1.2
1,009,174 + +2.9
1,009,174 + +1.7
1,009,175 - +0.5
1,009,175 - +0.4
1,009,175 - +0.5
1,009,175 - +1.1
1,009,175 - -0.5
1,009,175 - -1.5
1,009,175 - -0.2
1,009,175 - +1.4
1,009,175 - -1.9
1,009,175 - -0.0
1,009,175 - -0.9
1,009,175 - -0.9
1,009,178 + -0.5
1,009,178 + +0.1
1,009,179 - +1.7
1,009,179 - +0.3
1,009,179 - +0.1
1,009,179 - +0.8
1,009,276 - -2.2
1,009,309 - +1.4
1,009,334 + +2.1
1,009,368 - -1.2
1,009,370 + -0.9
1,009,371 - +0.4
1,009,371 - -0.9
1,009,371 - +0.6
1,009,387 - +0.8
1,009,387 - -1.0
1,009,387 - +0.6
1,009,387 - +0.1
1,009,437 + +1.4
1,009,437 + +0.1
1,009,437 + +0.7
1,009,438 - +0.3
1,009,438 - -1.9
1,009,438 - -0.6
1,009,438 - +0.3
1,009,450 + +1.1
1,009,451 - -0.2
1,009,451 - +0.4
1,009,454 + +0.1
1,009,464 + +1.4
1,009,464 + -0.3
1,009,464 + +0.1
1,009,464 + -2.2
1,009,464 + -0.3
1,009,464 + +1.1
1,009,464 + +1.4
1,009,465 - -1.1
1,009,465 - -0.2
1,009,465 - -0.6
1,009,465 - +0.1
1,009,465 - -0.6
1,009,465 - -0.8
1,009,465 - -0.1
1,009,465 - -0.6
1,009,465 - -1.5
1,009,516 + -1.5
1,009,516 + -0.2
1,009,516 + -1.4
1,009,517 - -0.5
1,009,517 - -1.9
1,009,520 + -2.9
1,009,520 + -1.3
1,009,520 + -0.2
1,009,520 + +0.1
1,009,520 + -1.5
1,009,521 - -3.1
1,009,521 - +0.1
1,009,521 - +0.8
1,009,521 - +1.4
1,009,521 - -0.9
1,009,521 - +0.6
1,009,521 - +0.8
1,009,558 - +0.1
1,009,558 - +1.0
1,009,566 + +0.1
1,009,622 + +0.1
1,009,623 - +1.6
1,009,638 + -0.9
1,009,660 + +2.1
1,009,660 + +0.1
1,009,660 + +0.1
1,009,660 + -0.1
1,009,660 + -2.9
1,009,660 + -1.0
1,009,660 + +1.1
1,009,660 + -0.5
1,009,660 + -0.3
1,009,661 - +0.1
1,009,663 + -0.9
1,009,677 + +0.9
1,009,677 + +0.7
1,009,677 + -0.1
1,009,677 + -0.9
1,009,677 + -0.6
1,009,677 + -0.6
1,009,677 + -2.2
1,009,677 + -1.5
1,009,678 - -0.5
1,009,678 - -0.4
1,009,678 - -0.9
1,009,678 - -0.2
1,009,678 - +0.1
1,009,678 - -1.2
1,009,678 - +3.1
1,009,678 - +0.8
1,009,679 + +0.8
1,009,679 + -0.4
1,009,679 + -1.9
1,009,680 - +0.1
1,009,680 - -1.4
1,009,686 + +1.3
1,009,687 - -0.5
1,009,715 + -0.2
1,009,715 + +0.5
1,009,715 + +0.7
1,009,715 + +0.5
1,009,715 + +0.4
1,009,715 + +0.5
1,009,715 + +1.4
1,009,715 + +1.1
1,009,716 - +0.4
1,009,716 - +1.9
1,009,716 - -1.9
1,009,716 - +1.1
1,009,716 - -1.9
1,009,716 - +2.1
1,009,722 + -1.9
1,009,723 - -0.5
1,009,772 + +0.1
1,009,772 + -1.4
1,009,772 + +1.4
1,009,772 + -1.9
1,009,772 + -0.5
1,009,772 + -2.1
1,009,773 - +1.5
1,009,925 + +1.1
1,009,932 + +1.0
1,010,124 + Pf1N1B4_886 0.71 -2.5
1,010,124 + +1.7
1,010,124 + Pf1N1B4_886 0.71 -0.2
1,010,125 - Pf1N1B4_886 0.71 -2.5
1,010,125 - Pf1N1B4_886 0.71 -1.2
1,010,125 - Pf1N1B4_886 0.71 -1.5
1,010,125 - Pf1N1B4_886 0.71 +0.5
1,010,211 + +1.7
1,010,211 + +1.0
1,010,212 - -0.3
1,010,212 - -0.5
1,010,236 + -0.6
1,010,236 + +0.4
1,010,236 + +0.3
1,010,237 - +0.4
1,010,237 - +0.5
1,010,237 - -2.2
1,010,237 - -0.2
1,010,237 - +0.3
1,010,237 - -0.3
1,010,237 - +1.1
1,010,237 - +0.1
1,010,237 - +0.1

Or see this region's nucleotide sequence