Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_768

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_767 and Pf1N1B4_768 are separated by 83 nucleotidesPf1N1B4_768 and Pf1N1B4_769 are separated by 369 nucleotides Pf1N1B4_767 - Glycerol kinase (EC 2.7.1.30), at 870,987 to 872,492 _767 Pf1N1B4_768 - Glycerol-3-phosphate regulon repressor, DeoR family, at 872,576 to 873,331 _768 Pf1N1B4_769 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 873,701 to 875,161 _769 Position (kb) 872 873 874Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 871.773 kb on + strand, within Pf1N1B4_767at 871.773 kb on + strand, within Pf1N1B4_767at 871.773 kb on + strand, within Pf1N1B4_767at 871.773 kb on + strand, within Pf1N1B4_767at 871.774 kb on - strand, within Pf1N1B4_767at 871.774 kb on - strandat 871.971 kb on + strand, within Pf1N1B4_767at 871.971 kb on + strand, within Pf1N1B4_767at 871.972 kb on - strand, within Pf1N1B4_767at 872.007 kb on + strand, within Pf1N1B4_767at 872.313 kb on + strand, within Pf1N1B4_767at 872.313 kb on + strand, within Pf1N1B4_767at 872.491 kb on - strandat 872.508 kb on + strandat 872.508 kb on + strandat 872.508 kb on + strandat 872.509 kb on - strandat 872.509 kb on - strandat 872.509 kb on - strandat 872.509 kb on - strandat 873.329 kb on + strandat 873.398 kb on + strandat 873.398 kb on + strandat 873.399 kb on - strandat 873.399 kb on - strandat 873.399 kb on - strandat 873.399 kb on - strandat 873.399 kb on - strandat 873.399 kb on - strandat 873.399 kb on - strandat 873.399 kb on - strandat 873.401 kb on - strandat 873.401 kb on - strandat 873.474 kb on - strandat 873.474 kb on - strandat 873.474 kb on - strandat 873.474 kb on - strandat 873.474 kb on - strandat 873.474 kb on - strandat 873.595 kb on + strandat 873.597 kb on + strandat 873.635 kb on + strandat 873.635 kb on + strandat 873.635 kb on + strandat 873.635 kb on + strandat 873.636 kb on - strandat 873.636 kb on - strandat 873.636 kb on - strandat 873.644 kb on + strandat 873.644 kb on + strandat 873.665 kb on + strandat 873.665 kb on + strandat 873.665 kb on + strandat 873.665 kb on + strandat 873.666 kb on - strandat 873.831 kb on - strandat 873.977 kb on + strand, within Pf1N1B4_769at 874.116 kb on + strand, within Pf1N1B4_769at 874.116 kb on + strand, within Pf1N1B4_769

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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871,773 + Pf1N1B4_767 0.52 +0.0
871,773 + Pf1N1B4_767 0.52 +1.2
871,773 + Pf1N1B4_767 0.52 -0.7
871,773 + Pf1N1B4_767 0.52 -1.3
871,774 - Pf1N1B4_767 0.52 -0.5
871,774 - +1.0
871,971 + Pf1N1B4_767 0.65 +2.6
871,971 + Pf1N1B4_767 0.65 -0.7
871,972 - Pf1N1B4_767 0.65 -1.0
872,007 + Pf1N1B4_767 0.68 +2.0
872,313 + Pf1N1B4_767 0.88 -0.5
872,313 + Pf1N1B4_767 0.88 -1.5
872,491 - +2.0
872,508 + +0.3
872,508 + +0.0
872,508 + -1.6
872,509 - +1.4
872,509 - +0.6
872,509 - +1.0
872,509 - -1.0
873,329 + -0.5
873,398 + -1.3
873,398 + +1.2
873,399 - -2.0
873,399 - -1.8
873,399 - -1.8
873,399 - -0.7
873,399 - +1.6
873,399 - +0.0
873,399 - -0.2
873,399 - +1.6
873,401 - -2.3
873,401 - -0.1
873,474 - -0.8
873,474 - +1.6
873,474 - -0.8
873,474 - -2.2
873,474 - -0.4
873,474 - -0.1
873,595 + -1.5
873,597 + -1.5
873,635 + -3.4
873,635 + -2.5
873,635 + -1.6
873,635 + -1.5
873,636 - -1.0
873,636 - -0.1
873,636 - -1.5
873,644 + -0.4
873,644 + -1.0
873,665 + -2.3
873,665 + -2.0
873,665 + -2.3
873,665 + -1.5
873,666 - -0.8
873,831 - -1.0
873,977 + Pf1N1B4_769 0.19 +0.0
874,116 + Pf1N1B4_769 0.28 -1.0
874,116 + Pf1N1B4_769 0.28 -1.0

Or see this region's nucleotide sequence