Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_721 and Pf1N1B4_722 are separated by 4 nucleotides Pf1N1B4_722 and Pf1N1B4_723 are separated by 148 nucleotides
Pf1N1B4_721 - InaA protein, at 824,741 to 825,454
_721
Pf1N1B4_722 - SAM-dependent methyltransferases, at 825,459 to 826,127
_722
Pf1N1B4_723 - two-component system sensor protein, at 826,276 to 827,556
_723
Position (kb) 825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 824.492 kb on + strand at 824.492 kb on + strand at 824.492 kb on + strand at 824.493 kb on - strand at 824.493 kb on - strand at 824.493 kb on - strand at 824.556 kb on + strand at 824.557 kb on - strand at 824.742 kb on + strand at 824.743 kb on - strand at 824.743 kb on - strand at 824.745 kb on - strand at 824.745 kb on - strand at 824.745 kb on - strand at 824.778 kb on + strand at 824.951 kb on + strand, within Pf1N1B4_721 at 824.951 kb on + strand, within Pf1N1B4_721 at 824.951 kb on + strand, within Pf1N1B4_721 at 824.952 kb on - strand, within Pf1N1B4_721 at 824.952 kb on - strand, within Pf1N1B4_721 at 824.952 kb on - strand, within Pf1N1B4_721 at 824.964 kb on + strand, within Pf1N1B4_721 at 824.965 kb on - strand, within Pf1N1B4_721 at 824.965 kb on - strand, within Pf1N1B4_721 at 824.965 kb on - strand, within Pf1N1B4_721 at 824.965 kb on - strand, within Pf1N1B4_721 at 824.965 kb on - strand at 824.968 kb on + strand, within Pf1N1B4_721 at 824.968 kb on + strand, within Pf1N1B4_721 at 824.969 kb on - strand, within Pf1N1B4_721 at 824.969 kb on - strand, within Pf1N1B4_721 at 824.969 kb on - strand, within Pf1N1B4_721 at 824.969 kb on - strand, within Pf1N1B4_721 at 824.969 kb on - strand, within Pf1N1B4_721 at 824.969 kb on - strand, within Pf1N1B4_721 at 824.969 kb on - strand at 824.969 kb on - strand, within Pf1N1B4_721 at 824.969 kb on - strand, within Pf1N1B4_721 at 824.969 kb on - strand, within Pf1N1B4_721 at 824.969 kb on - strand, within Pf1N1B4_721 at 825.054 kb on + strand, within Pf1N1B4_721 at 825.270 kb on + strand, within Pf1N1B4_721 at 825.271 kb on - strand, within Pf1N1B4_721 at 825.271 kb on - strand, within Pf1N1B4_721 at 825.271 kb on - strand, within Pf1N1B4_721 at 825.274 kb on + strand, within Pf1N1B4_721 at 825.275 kb on - strand, within Pf1N1B4_721 at 825.275 kb on - strand, within Pf1N1B4_721 at 825.275 kb on - strand, within Pf1N1B4_721 at 825.275 kb on - strand, within Pf1N1B4_721 at 825.275 kb on - strand, within Pf1N1B4_721 at 825.275 kb on - strand, within Pf1N1B4_721 at 825.275 kb on - strand, within Pf1N1B4_721 at 825.275 kb on - strand, within Pf1N1B4_721 at 825.297 kb on + strand, within Pf1N1B4_721 at 825.298 kb on - strand, within Pf1N1B4_721 at 825.372 kb on - strand, within Pf1N1B4_721 at 825.400 kb on - strand at 825.461 kb on - strand at 825.461 kb on - strand at 825.471 kb on + strand at 825.472 kb on - strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.474 kb on + strand at 825.475 kb on - strand at 825.478 kb on + strand at 825.478 kb on + strand at 825.478 kb on + strand at 825.478 kb on + strand at 825.479 kb on - strand at 825.479 kb on - strand at 825.479 kb on - strand at 825.479 kb on - strand at 825.479 kb on - strand at 825.479 kb on - strand at 825.481 kb on - strand at 825.496 kb on + strand at 825.496 kb on + strand at 825.496 kb on + strand at 825.497 kb on - strand at 825.497 kb on - strand at 825.497 kb on - strand at 825.605 kb on + strand, within Pf1N1B4_722 at 825.822 kb on + strand, within Pf1N1B4_722 at 825.822 kb on + strand, within Pf1N1B4_722 at 826.066 kb on + strand at 826.067 kb on - strand at 826.090 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.164 kb on + strand at 826.165 kb on - strand at 826.165 kb on - strand at 826.165 kb on - strand at 826.165 kb on - strand at 826.165 kb on - strand at 826.169 kb on - strand at 826.216 kb on + strand at 826.216 kb on + strand at 826.216 kb on + strand at 826.217 kb on - strand at 826.472 kb on - strand, within Pf1N1B4_723 at 826.472 kb on - strand, within Pf1N1B4_723 at 826.472 kb on - strand, within Pf1N1B4_723 at 826.523 kb on + strand, within Pf1N1B4_723 at 826.523 kb on + strand, within Pf1N1B4_723 at 826.523 kb on + strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.524 kb on - strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.538 kb on + strand, within Pf1N1B4_723 at 826.539 kb on - strand, within Pf1N1B4_723 at 826.539 kb on - strand, within Pf1N1B4_723 at 826.539 kb on - strand, within Pf1N1B4_723 at 826.551 kb on + strand, within Pf1N1B4_723 at 826.551 kb on + strand, within Pf1N1B4_723 at 826.594 kb on - strand, within Pf1N1B4_723 at 826.594 kb on - strand, within Pf1N1B4_723 at 826.596 kb on - strand, within Pf1N1B4_723 at 826.675 kb on + strand, within Pf1N1B4_723 at 826.888 kb on + strand, within Pf1N1B4_723 at 826.888 kb on + strand, within Pf1N1B4_723 at 826.888 kb on + strand, within Pf1N1B4_723 at 826.889 kb on - strand, within Pf1N1B4_723 at 826.889 kb on - strand, within Pf1N1B4_723 at 826.889 kb on - strand, within Pf1N1B4_723 at 826.889 kb on - strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.000 kb on + strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.001 kb on - strand, within Pf1N1B4_723 at 827.029 kb on + strand, within Pf1N1B4_723 at 827.113 kb on + strand, within Pf1N1B4_723 at 827.114 kb on - strand, within Pf1N1B4_723
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 824,492 + +0.9 824,492 + -0.2 824,492 + -0.9 824,493 - -1.0 824,493 - -2.0 824,493 - +0.6 824,556 + -1.5 824,557 - +1.6 824,742 + +0.0 824,743 - +0.0 824,743 - -0.8 824,745 - -0.4 824,745 - +0.5 824,745 - +0.0 824,778 + -1.0 824,951 + Pf1N1B4_721 0.29 -2.8 824,951 + Pf1N1B4_721 0.29 +0.6 824,951 + Pf1N1B4_721 0.29 -0.5 824,952 - Pf1N1B4_721 0.30 +2.4 824,952 - Pf1N1B4_721 0.30 -0.6 824,952 - Pf1N1B4_721 0.30 -0.6 824,964 + Pf1N1B4_721 0.31 +0.8 824,965 - Pf1N1B4_721 0.31 -0.2 824,965 - Pf1N1B4_721 0.31 +1.0 824,965 - Pf1N1B4_721 0.31 -2.0 824,965 - Pf1N1B4_721 0.31 -0.1 824,965 - +2.6 824,968 + Pf1N1B4_721 0.32 -0.8 824,968 + Pf1N1B4_721 0.32 -0.1 824,969 - Pf1N1B4_721 0.32 +0.3 824,969 - Pf1N1B4_721 0.32 +1.6 824,969 - Pf1N1B4_721 0.32 +2.6 824,969 - Pf1N1B4_721 0.32 +1.6 824,969 - Pf1N1B4_721 0.32 -0.4 824,969 - Pf1N1B4_721 0.32 +1.0 824,969 - +0.5 824,969 - Pf1N1B4_721 0.32 -1.5 824,969 - Pf1N1B4_721 0.32 +0.4 824,969 - Pf1N1B4_721 0.32 +0.0 824,969 - Pf1N1B4_721 0.32 +0.9 825,054 + Pf1N1B4_721 0.44 -1.5 825,270 + Pf1N1B4_721 0.74 +0.0 825,271 - Pf1N1B4_721 0.74 +0.0 825,271 - Pf1N1B4_721 0.74 -0.5 825,271 - Pf1N1B4_721 0.74 +0.6 825,274 + Pf1N1B4_721 0.75 -2.3 825,275 - Pf1N1B4_721 0.75 +0.0 825,275 - Pf1N1B4_721 0.75 -0.7 825,275 - Pf1N1B4_721 0.75 -0.8 825,275 - Pf1N1B4_721 0.75 -0.8 825,275 - Pf1N1B4_721 0.75 -1.0 825,275 - Pf1N1B4_721 0.75 -1.0 825,275 - Pf1N1B4_721 0.75 +0.4 825,275 - Pf1N1B4_721 0.75 -1.0 825,297 + Pf1N1B4_721 0.78 +0.5 825,298 - Pf1N1B4_721 0.78 -1.5 825,372 - Pf1N1B4_721 0.88 -0.4 825,400 - -0.4 825,461 - -1.2 825,461 - +0.0 825,471 + -0.4 825,472 - +0.3 825,474 + -1.5 825,474 + +0.5 825,474 + -2.3 825,474 + +0.0 825,474 + -1.5 825,474 + +1.0 825,474 + -1.5 825,474 + +0.0 825,475 - +0.8 825,478 + +1.6 825,478 + +0.2 825,478 + +1.0 825,478 + +0.8 825,479 - -1.0 825,479 - +0.3 825,479 - +0.0 825,479 - +0.5 825,479 - +1.0 825,479 - +0.0 825,481 - +0.0 825,496 + +0.5 825,496 + -2.0 825,496 + -2.5 825,497 - +0.3 825,497 - +0.7 825,497 - +1.4 825,605 + Pf1N1B4_722 0.22 -3.1 825,822 + Pf1N1B4_722 0.54 -2.0 825,822 + Pf1N1B4_722 0.54 +0.4 826,066 + +0.0 826,067 - +1.0 826,090 + -1.1 826,164 + +0.2 826,164 + +1.8 826,164 + +0.0 826,164 + -1.2 826,164 + -2.0 826,164 + -2.0 826,164 + +0.0 826,164 + -1.5 826,164 + -1.0 826,164 + +2.0 826,164 + +0.5 826,164 + +1.7 826,164 + -1.0 826,164 + +0.2 826,164 + -1.3 826,164 + +0.0 826,165 - +1.3 826,165 - +0.6 826,165 - +1.5 826,165 - +0.4 826,165 - -0.5 826,169 - +1.0 826,216 + +1.0 826,216 + -2.3 826,216 + +1.6 826,217 - +0.0 826,472 - Pf1N1B4_723 0.15 +1.5 826,472 - Pf1N1B4_723 0.15 +0.8 826,472 - Pf1N1B4_723 0.15 +1.7 826,523 + Pf1N1B4_723 0.19 -1.1 826,523 + Pf1N1B4_723 0.19 -0.8 826,523 + Pf1N1B4_723 0.19 -1.0 826,524 - Pf1N1B4_723 0.19 -0.0 826,524 - Pf1N1B4_723 0.19 -1.3 826,524 - Pf1N1B4_723 0.19 +1.8 826,524 - Pf1N1B4_723 0.19 +2.0 826,524 - Pf1N1B4_723 0.19 -0.1 826,524 - Pf1N1B4_723 0.19 +1.7 826,524 - Pf1N1B4_723 0.19 +0.4 826,538 + Pf1N1B4_723 0.20 -0.3 826,538 + Pf1N1B4_723 0.20 +0.5 826,538 + Pf1N1B4_723 0.20 +0.7 826,538 + Pf1N1B4_723 0.20 +0.5 826,538 + Pf1N1B4_723 0.20 +0.9 826,538 + Pf1N1B4_723 0.20 +0.0 826,538 + Pf1N1B4_723 0.20 -0.5 826,539 - Pf1N1B4_723 0.21 +0.6 826,539 - Pf1N1B4_723 0.21 +0.8 826,539 - Pf1N1B4_723 0.21 +0.4 826,551 + Pf1N1B4_723 0.21 +0.0 826,551 + Pf1N1B4_723 0.21 +2.2 826,594 - Pf1N1B4_723 0.25 +0.0 826,594 - Pf1N1B4_723 0.25 -0.5 826,596 - Pf1N1B4_723 0.25 -0.4 826,675 + Pf1N1B4_723 0.31 -0.5 826,888 + Pf1N1B4_723 0.48 -0.2 826,888 + Pf1N1B4_723 0.48 -0.3 826,888 + Pf1N1B4_723 0.48 +0.0 826,889 - Pf1N1B4_723 0.48 +0.9 826,889 - Pf1N1B4_723 0.48 +0.3 826,889 - Pf1N1B4_723 0.48 +1.4 826,889 - Pf1N1B4_723 0.48 +0.4 827,000 + Pf1N1B4_723 0.57 -1.5 827,000 + Pf1N1B4_723 0.57 -1.0 827,000 + Pf1N1B4_723 0.57 +0.9 827,000 + Pf1N1B4_723 0.57 +0.0 827,000 + Pf1N1B4_723 0.57 -0.5 827,000 + Pf1N1B4_723 0.57 +0.1 827,001 - Pf1N1B4_723 0.57 -0.4 827,001 - Pf1N1B4_723 0.57 +1.3 827,001 - Pf1N1B4_723 0.57 +0.4 827,001 - Pf1N1B4_723 0.57 +3.0 827,001 - Pf1N1B4_723 0.57 +0.9 827,001 - Pf1N1B4_723 0.57 +1.0 827,001 - Pf1N1B4_723 0.57 +0.8 827,001 - Pf1N1B4_723 0.57 +0.4 827,029 + Pf1N1B4_723 0.59 -0.6 827,113 + Pf1N1B4_723 0.65 +0.6 827,114 - Pf1N1B4_723 0.65 +1.7
Or see this region's nucleotide sequence