Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5796 and Pf1N1B4_5797 are separated by 43 nucleotides Pf1N1B4_5797 and Pf1N1B4_5798 are separated by 191 nucleotides
Pf1N1B4_5796 - MutT/nudix family protein, at 232,394 to 232,756
_5796
Pf1N1B4_5797 - 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25), at 232,800 to 233,573
_5797
Pf1N1B4_5798 - 2-chlorobenzoate 1,2-dioxygenase reductase component, at 233,765 to 234,778
_5798
Position (kb)
232
233
234 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 231.853 kb on + strand at 231.853 kb on + strand at 231.853 kb on + strand at 231.854 kb on - strand at 231.863 kb on + strand at 231.888 kb on + strand at 231.889 kb on - strand at 231.971 kb on - strand at 231.971 kb on - strand at 231.971 kb on - strand at 232.040 kb on - strand at 232.172 kb on + strand at 232.173 kb on - strand at 232.173 kb on - strand at 232.216 kb on + strand at 232.216 kb on + strand at 232.217 kb on - strand at 232.217 kb on - strand at 232.222 kb on - strand at 232.222 kb on - strand at 232.347 kb on - strand at 232.401 kb on + strand at 232.401 kb on + strand at 232.402 kb on - strand at 232.532 kb on + strand at 232.532 kb on + strand, within Pf1N1B4_5796 at 232.567 kb on + strand at 232.568 kb on + strand, within Pf1N1B4_5796 at 232.569 kb on - strand, within Pf1N1B4_5796 at 232.569 kb on - strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.608 kb on + strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.609 kb on - strand, within Pf1N1B4_5796 at 232.610 kb on + strand, within Pf1N1B4_5796 at 232.611 kb on - strand, within Pf1N1B4_5796 at 232.611 kb on - strand, within Pf1N1B4_5796 at 232.611 kb on - strand, within Pf1N1B4_5796 at 232.611 kb on - strand, within Pf1N1B4_5796 at 232.611 kb on - strand at 232.755 kb on - strand at 232.846 kb on + strand at 232.847 kb on - strand at 232.847 kb on - strand at 232.847 kb on - strand at 232.847 kb on - strand at 233.380 kb on + strand, within Pf1N1B4_5797 at 233.409 kb on + strand, within Pf1N1B4_5797 at 233.409 kb on + strand, within Pf1N1B4_5797 at 233.410 kb on - strand, within Pf1N1B4_5797 at 233.577 kb on + strand at 233.578 kb on - strand at 233.605 kb on + strand at 233.606 kb on - strand at 233.606 kb on - strand at 233.628 kb on + strand at 233.629 kb on - strand at 233.685 kb on + strand at 233.797 kb on - strand at 233.874 kb on + strand, within Pf1N1B4_5798 at 233.928 kb on + strand, within Pf1N1B4_5798 at 234.171 kb on - strand, within Pf1N1B4_5798 at 234.175 kb on - strand, within Pf1N1B4_5798 at 234.175 kb on - strand, within Pf1N1B4_5798 at 234.357 kb on + strand at 234.357 kb on + strand, within Pf1N1B4_5798 at 234.358 kb on - strand, within Pf1N1B4_5798 at 234.358 kb on - strand, within Pf1N1B4_5798 at 234.460 kb on - strand, within Pf1N1B4_5798
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 231,853 + -1.9 231,853 + +0.3 231,853 + +1.3 231,854 - -2.3 231,863 + -1.1 231,888 + +1.0 231,889 - +0.4 231,971 - +0.4 231,971 - -1.3 231,971 - -1.9 232,040 - -1.9 232,172 + +3.0 232,173 - -2.0 232,173 - +0.1 232,216 + +0.3 232,216 + +0.5 232,217 - -1.3 232,217 - -0.6 232,222 - +1.0 232,222 - +0.7 232,347 - +1.0 232,401 + +0.1 232,401 + +1.3 232,402 - +1.3 232,532 + +0.3 232,532 + Pf1N1B4_5796 0.38 -1.9 232,567 + +0.7 232,568 + Pf1N1B4_5796 0.48 -0.9 232,569 - Pf1N1B4_5796 0.48 -0.3 232,569 - Pf1N1B4_5796 0.48 +0.1 232,608 + Pf1N1B4_5796 0.59 +0.7 232,608 + Pf1N1B4_5796 0.59 +0.7 232,608 + Pf1N1B4_5796 0.59 -1.3 232,608 + Pf1N1B4_5796 0.59 -0.5 232,608 + Pf1N1B4_5796 0.59 +0.1 232,608 + Pf1N1B4_5796 0.59 +0.3 232,608 + +0.5 232,608 + Pf1N1B4_5796 0.59 -0.3 232,608 + Pf1N1B4_5796 0.59 +1.7 232,608 + Pf1N1B4_5796 0.59 -0.3 232,608 + Pf1N1B4_5796 0.59 +0.1 232,608 + Pf1N1B4_5796 0.59 -1.3 232,608 + Pf1N1B4_5796 0.59 -0.6 232,608 + Pf1N1B4_5796 0.59 +0.1 232,608 + Pf1N1B4_5796 0.59 +0.3 232,609 - Pf1N1B4_5796 0.59 +0.0 232,609 - Pf1N1B4_5796 0.59 -1.3 232,609 - Pf1N1B4_5796 0.59 -1.3 232,609 - Pf1N1B4_5796 0.59 -0.2 232,609 - Pf1N1B4_5796 0.59 -2.2 232,609 - Pf1N1B4_5796 0.59 +2.0 232,609 - Pf1N1B4_5796 0.59 -1.6 232,609 - Pf1N1B4_5796 0.59 +0.3 232,609 - Pf1N1B4_5796 0.59 +1.9 232,609 - Pf1N1B4_5796 0.59 -1.3 232,609 - Pf1N1B4_5796 0.59 -0.3 232,609 - Pf1N1B4_5796 0.59 -0.3 232,609 - Pf1N1B4_5796 0.59 -0.8 232,610 + Pf1N1B4_5796 0.60 +0.4 232,611 - Pf1N1B4_5796 0.60 +0.9 232,611 - Pf1N1B4_5796 0.60 +0.1 232,611 - Pf1N1B4_5796 0.60 -0.3 232,611 - Pf1N1B4_5796 0.60 +1.3 232,611 - +0.3 232,755 - +0.3 232,846 + -0.9 232,847 - +1.3 232,847 - -1.3 232,847 - +1.1 232,847 - -1.9 233,380 + Pf1N1B4_5797 0.75 -1.9 233,409 + Pf1N1B4_5797 0.79 -1.9 233,409 + Pf1N1B4_5797 0.79 -0.9 233,410 - Pf1N1B4_5797 0.79 -0.9 233,577 + -2.3 233,578 - -0.3 233,605 + +1.3 233,606 - +0.3 233,606 - -1.2 233,628 + -0.0 233,629 - -0.3 233,685 + -1.1 233,797 - -1.3 233,874 + Pf1N1B4_5798 0.11 +0.7 233,928 + Pf1N1B4_5798 0.16 +0.3 234,171 - Pf1N1B4_5798 0.40 +0.9 234,175 - Pf1N1B4_5798 0.40 -3.1 234,175 - Pf1N1B4_5798 0.40 +0.4 234,357 + +0.1 234,357 + Pf1N1B4_5798 0.58 +0.3 234,358 - Pf1N1B4_5798 0.58 +1.9 234,358 - Pf1N1B4_5798 0.58 +1.5 234,460 - Pf1N1B4_5798 0.69 -1.0
Or see this region's nucleotide sequence