Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5690

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5687 and Pf1N1B4_5688 are separated by 57 nucleotidesPf1N1B4_5688 and Pf1N1B4_5689 are separated by 11 nucleotidesPf1N1B4_5689 and Pf1N1B4_5690 are separated by 70 nucleotidesPf1N1B4_5690 and Pf1N1B4_6053 are separated by 79 nucleotidesPf1N1B4_6053 and Pf1N1B4_5691 are separated by 507 nucleotides Pf1N1B4_5687 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 126,372 to 126,809 _5687 Pf1N1B4_5688 - hypothetical protein, at 126,867 to 127,196 _5688 Pf1N1B4_5689 - Lactoylglutathione lyase, at 127,208 to 127,600 _5689 Pf1N1B4_5690 - Putative TEGT family carrier/transport protein, at 127,671 to 128,387 _5690 Pf1N1B4_6053 - tRNA-Ser-TGA, at 128,467 to 128,551 _6053 Pf1N1B4_5691 - Chromosome initiation inhibitor, at 129,059 to 130,000 _5691 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 126.834 kb on - strandat 126.901 kb on + strand, within Pf1N1B4_5688at 127.005 kb on + strand, within Pf1N1B4_5688at 127.005 kb on + strand, within Pf1N1B4_5688at 127.005 kb on + strand, within Pf1N1B4_5688at 127.006 kb on - strandat 127.020 kb on + strand, within Pf1N1B4_5688at 127.068 kb on + strand, within Pf1N1B4_5688at 127.069 kb on - strand, within Pf1N1B4_5688at 127.074 kb on + strandat 127.074 kb on + strand, within Pf1N1B4_5688at 127.075 kb on - strand, within Pf1N1B4_5688at 127.075 kb on - strand, within Pf1N1B4_5688at 127.096 kb on + strand, within Pf1N1B4_5688at 127.097 kb on - strand, within Pf1N1B4_5688at 127.109 kb on - strand, within Pf1N1B4_5688at 127.155 kb on + strand, within Pf1N1B4_5688at 127.255 kb on - strandat 127.263 kb on - strand, within Pf1N1B4_5689at 127.460 kb on + strand, within Pf1N1B4_5689at 127.544 kb on + strand, within Pf1N1B4_5689at 127.545 kb on - strand, within Pf1N1B4_5689at 127.545 kb on - strand, within Pf1N1B4_5689at 127.545 kb on - strand, within Pf1N1B4_5689at 127.545 kb on - strandat 127.546 kb on + strand, within Pf1N1B4_5689at 127.546 kb on + strand, within Pf1N1B4_5689at 127.546 kb on + strand, within Pf1N1B4_5689at 127.630 kb on - strandat 127.727 kb on - strandat 127.727 kb on - strandat 127.735 kb on - strandat 127.735 kb on - strandat 127.739 kb on - strandat 127.763 kb on - strand, within Pf1N1B4_5690at 127.763 kb on - strand, within Pf1N1B4_5690at 127.966 kb on + strand, within Pf1N1B4_5690at 127.966 kb on + strand, within Pf1N1B4_5690at 127.967 kb on - strand, within Pf1N1B4_5690at 128.292 kb on + strand, within Pf1N1B4_5690at 128.615 kb on - strandat 128.654 kb on - strandat 128.706 kb on - strandat 128.864 kb on - strandat 128.864 kb on - strandat 128.864 kb on - strandat 128.864 kb on - strandat 128.882 kb on - strandat 128.903 kb on - strandat 128.903 kb on - strandat 129.056 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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126,834 - -0.6
126,901 + Pf1N1B4_5688 0.10 +0.5
127,005 + Pf1N1B4_5688 0.42 -2.2
127,005 + Pf1N1B4_5688 0.42 -0.9
127,005 + Pf1N1B4_5688 0.42 -0.8
127,006 - +2.0
127,020 + Pf1N1B4_5688 0.46 -0.5
127,068 + Pf1N1B4_5688 0.61 -0.3
127,069 - Pf1N1B4_5688 0.61 +0.3
127,074 + +1.3
127,074 + Pf1N1B4_5688 0.63 +0.2
127,075 - Pf1N1B4_5688 0.63 +0.7
127,075 - Pf1N1B4_5688 0.63 +0.5
127,096 + Pf1N1B4_5688 0.69 -0.3
127,097 - Pf1N1B4_5688 0.70 -1.7
127,109 - Pf1N1B4_5688 0.73 -1.7
127,155 + Pf1N1B4_5688 0.87 +0.0
127,255 - -0.9
127,263 - Pf1N1B4_5689 0.14 -0.1
127,460 + Pf1N1B4_5689 0.64 -0.3
127,544 + Pf1N1B4_5689 0.85 -0.7
127,545 - Pf1N1B4_5689 0.86 +1.3
127,545 - Pf1N1B4_5689 0.86 +0.3
127,545 - Pf1N1B4_5689 0.86 -1.0
127,545 - +0.3
127,546 + Pf1N1B4_5689 0.86 -0.7
127,546 + Pf1N1B4_5689 0.86 -1.3
127,546 + Pf1N1B4_5689 0.86 -1.9
127,630 - +0.5
127,727 - -2.5
127,727 - -0.9
127,735 - -0.9
127,735 - +0.6
127,739 - +0.7
127,763 - Pf1N1B4_5690 0.13 -0.3
127,763 - Pf1N1B4_5690 0.13 -1.3
127,966 + Pf1N1B4_5690 0.41 -1.9
127,966 + Pf1N1B4_5690 0.41 +0.1
127,967 - Pf1N1B4_5690 0.41 -0.3
128,292 + Pf1N1B4_5690 0.87 -1.5
128,615 - -0.3
128,654 - -1.9
128,706 - +0.3
128,864 - -0.3
128,864 - -0.3
128,864 - +0.1
128,864 - -0.1
128,882 - +0.7
128,903 - -0.7
128,903 - +1.3
129,056 - -0.3

Or see this region's nucleotide sequence