Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5566 and Pf1N1B4_5567 overlap by 49 nucleotides Pf1N1B4_5567 and Pf1N1B4_5568 are separated by 31 nucleotides Pf1N1B4_5568 and Pf1N1B4_5569 are separated by 167 nucleotides
Pf1N1B4_5566 - putative replication protein (repA-like), at 338,147 to 339,406
_5566
Pf1N1B4_5567 - transcriptional regulator MvaT, P16 subunit, putative, at 339,358 to 339,717
_5567
Pf1N1B4_5568 - hypothetical protein, at 339,749 to 340,165
_5568
Pf1N1B4_5569 - hypothetical protein, at 340,333 to 340,686
_5569
Position (kb) 339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 338.367 kb on + strand, within Pf1N1B4_5566 at 338.368 kb on - strand at 338.368 kb on - strand, within Pf1N1B4_5566 at 338.372 kb on - strand, within Pf1N1B4_5566 at 338.372 kb on - strand at 338.524 kb on - strand, within Pf1N1B4_5566 at 338.529 kb on + strand, within Pf1N1B4_5566 at 338.530 kb on - strand, within Pf1N1B4_5566 at 338.622 kb on + strand, within Pf1N1B4_5566 at 338.629 kb on + strand, within Pf1N1B4_5566 at 338.663 kb on - strand, within Pf1N1B4_5566 at 338.666 kb on + strand, within Pf1N1B4_5566 at 338.666 kb on + strand at 338.667 kb on - strand, within Pf1N1B4_5566 at 338.708 kb on + strand, within Pf1N1B4_5566 at 338.708 kb on + strand, within Pf1N1B4_5566 at 338.815 kb on - strand, within Pf1N1B4_5566 at 338.816 kb on + strand, within Pf1N1B4_5566 at 338.817 kb on - strand, within Pf1N1B4_5566 at 338.817 kb on - strand, within Pf1N1B4_5566 at 338.817 kb on - strand at 338.861 kb on - strand, within Pf1N1B4_5566 at 338.862 kb on + strand, within Pf1N1B4_5566 at 338.862 kb on + strand, within Pf1N1B4_5566 at 338.891 kb on + strand at 338.892 kb on - strand, within Pf1N1B4_5566 at 338.984 kb on + strand, within Pf1N1B4_5566 at 338.984 kb on + strand, within Pf1N1B4_5566 at 338.984 kb on + strand at 339.012 kb on + strand, within Pf1N1B4_5566 at 339.012 kb on + strand at 339.012 kb on + strand at 339.022 kb on + strand, within Pf1N1B4_5566 at 339.105 kb on + strand, within Pf1N1B4_5566 at 339.105 kb on + strand, within Pf1N1B4_5566 at 339.106 kb on - strand, within Pf1N1B4_5566 at 339.290 kb on + strand at 339.290 kb on + strand at 339.291 kb on - strand at 339.307 kb on + strand at 339.307 kb on + strand at 339.308 kb on - strand at 339.310 kb on + strand at 339.310 kb on + strand at 339.310 kb on + strand at 339.310 kb on + strand at 339.317 kb on + strand at 339.320 kb on + strand at 339.320 kb on + strand at 339.320 kb on + strand at 339.320 kb on + strand at 339.353 kb on + strand at 339.353 kb on + strand at 339.353 kb on + strand at 339.354 kb on - strand at 339.402 kb on - strand at 339.448 kb on + strand, within Pf1N1B4_5567 at 339.449 kb on - strand, within Pf1N1B4_5567 at 339.482 kb on + strand, within Pf1N1B4_5567 at 339.482 kb on + strand, within Pf1N1B4_5567 at 339.483 kb on - strand, within Pf1N1B4_5567 at 339.483 kb on - strand, within Pf1N1B4_5567 at 339.483 kb on - strand, within Pf1N1B4_5567 at 339.483 kb on - strand, within Pf1N1B4_5567 at 339.499 kb on + strand, within Pf1N1B4_5567 at 339.654 kb on + strand, within Pf1N1B4_5567 at 339.711 kb on - strand at 339.897 kb on + strand, within Pf1N1B4_5568 at 339.897 kb on + strand, within Pf1N1B4_5568 at 339.897 kb on + strand, within Pf1N1B4_5568 at 339.897 kb on + strand at 339.898 kb on - strand, within Pf1N1B4_5568 at 339.898 kb on - strand, within Pf1N1B4_5568 at 339.898 kb on - strand, within Pf1N1B4_5568 at 340.165 kb on + strand at 340.165 kb on + strand at 340.235 kb on - strand at 340.235 kb on - strand at 340.235 kb on - strand at 340.235 kb on - strand at 340.294 kb on + strand at 340.294 kb on + strand at 340.312 kb on - strand at 340.329 kb on - strand at 340.329 kb on - strand at 340.329 kb on - strand at 340.600 kb on + strand, within Pf1N1B4_5569 at 340.601 kb on - strand, within Pf1N1B4_5569 at 340.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 338,367 + Pf1N1B4_5566 0.17 -0.2 338,368 - -1.5 338,368 - Pf1N1B4_5566 0.18 -1.6 338,372 - Pf1N1B4_5566 0.18 +0.3 338,372 - +0.1 338,524 - Pf1N1B4_5566 0.30 -1.0 338,529 + Pf1N1B4_5566 0.30 +0.1 338,530 - Pf1N1B4_5566 0.30 -0.8 338,622 + Pf1N1B4_5566 0.38 -2.2 338,629 + Pf1N1B4_5566 0.38 +1.1 338,663 - Pf1N1B4_5566 0.41 +0.2 338,666 + Pf1N1B4_5566 0.41 -0.7 338,666 + +1.1 338,667 - Pf1N1B4_5566 0.41 -0.7 338,708 + Pf1N1B4_5566 0.45 -0.3 338,708 + Pf1N1B4_5566 0.45 -0.9 338,815 - Pf1N1B4_5566 0.53 +1.1 338,816 + Pf1N1B4_5566 0.53 -0.6 338,817 - Pf1N1B4_5566 0.53 -0.8 338,817 - Pf1N1B4_5566 0.53 +2.2 338,817 - -1.5 338,861 - Pf1N1B4_5566 0.57 +0.1 338,862 + Pf1N1B4_5566 0.57 -0.0 338,862 + Pf1N1B4_5566 0.57 -0.5 338,891 + -1.5 338,892 - Pf1N1B4_5566 0.59 -2.7 338,984 + Pf1N1B4_5566 0.66 -0.4 338,984 + Pf1N1B4_5566 0.66 +0.8 338,984 + +0.1 339,012 + Pf1N1B4_5566 0.69 +0.4 339,012 + +1.5 339,012 + -0.5 339,022 + Pf1N1B4_5566 0.69 +3.3 339,105 + Pf1N1B4_5566 0.76 +1.1 339,105 + Pf1N1B4_5566 0.76 -0.9 339,106 - Pf1N1B4_5566 0.76 -0.9 339,290 + -0.5 339,290 + +0.0 339,291 - +1.7 339,307 + -1.2 339,307 + -1.9 339,308 - -0.9 339,310 + -1.5 339,310 + -0.3 339,310 + +1.8 339,310 + +1.1 339,317 + +0.5 339,320 + -2.7 339,320 + -0.0 339,320 + +0.1 339,320 + -0.3 339,353 + -1.9 339,353 + -1.3 339,353 + +0.9 339,354 - +0.8 339,402 - -0.3 339,448 + Pf1N1B4_5567 0.25 -0.6 339,449 - Pf1N1B4_5567 0.25 +0.8 339,482 + Pf1N1B4_5567 0.34 -0.0 339,482 + Pf1N1B4_5567 0.34 +2.1 339,483 - Pf1N1B4_5567 0.35 +1.1 339,483 - Pf1N1B4_5567 0.35 +0.8 339,483 - Pf1N1B4_5567 0.35 +1.7 339,483 - Pf1N1B4_5567 0.35 +1.7 339,499 + Pf1N1B4_5567 0.39 +0.2 339,654 + Pf1N1B4_5567 0.82 -0.0 339,711 - +2.1 339,897 + Pf1N1B4_5568 0.35 +1.1 339,897 + Pf1N1B4_5568 0.35 -0.2 339,897 + Pf1N1B4_5568 0.35 +1.3 339,897 + -0.9 339,898 - Pf1N1B4_5568 0.36 +2.0 339,898 - Pf1N1B4_5568 0.36 +0.9 339,898 - Pf1N1B4_5568 0.36 +2.8 340,165 + -1.7 340,165 + -1.9 340,235 - +2.2 340,235 - -2.9 340,235 - +1.9 340,235 - +2.6 340,294 + +0.5 340,294 + -0.4 340,312 - +1.5 340,329 - +1.0 340,329 - +2.7 340,329 - +2.4 340,600 + Pf1N1B4_5569 0.75 -0.9 340,601 - Pf1N1B4_5569 0.76 +0.1 340,657 - -0.5
Or see this region's nucleotide sequence