Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5278

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5276 and Pf1N1B4_5277 are separated by 149 nucleotidesPf1N1B4_5277 and Pf1N1B4_5278 are separated by 155 nucleotidesPf1N1B4_5278 and Pf1N1B4_5279 are separated by 320 nucleotidesPf1N1B4_5279 and Pf1N1B4_5280 are separated by 160 nucleotides Pf1N1B4_5276 - hypothetical protein, at 32,503 to 32,901 _5276 Pf1N1B4_5277 - Phage protein, at 33,051 to 33,326 _5277 Pf1N1B4_5278 - hypothetical protein, at 33,482 to 33,682 _5278 Pf1N1B4_5279 - hypothetical protein, at 34,003 to 34,209 _5279 Pf1N1B4_5280 - Nucleoid-associated protein, at 34,370 to 35,386 _5280 Position (kb) 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 32.521 kb on + strandat 32.521 kb on + strandat 32.521 kb on + strandat 32.860 kb on + strand, within Pf1N1B4_5276at 32.860 kb on + strand, within Pf1N1B4_5276at 32.860 kb on + strand, within Pf1N1B4_5276at 32.943 kb on + strandat 32.944 kb on - strandat 33.084 kb on + strandat 33.084 kb on + strand, within Pf1N1B4_5277at 33.085 kb on - strand, within Pf1N1B4_5277at 33.085 kb on - strand, within Pf1N1B4_5277at 33.188 kb on + strand, within Pf1N1B4_5277at 33.235 kb on + strand, within Pf1N1B4_5277at 33.236 kb on - strand, within Pf1N1B4_5277at 33.236 kb on - strand, within Pf1N1B4_5277at 33.263 kb on + strand, within Pf1N1B4_5277at 33.263 kb on + strand, within Pf1N1B4_5277at 33.264 kb on - strand, within Pf1N1B4_5277at 33.266 kb on + strand, within Pf1N1B4_5277at 33.266 kb on + strand, within Pf1N1B4_5277at 33.267 kb on - strand, within Pf1N1B4_5277at 33.361 kb on - strandat 33.361 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.627 kb on - strand, within Pf1N1B4_5278at 33.650 kb on + strandat 33.650 kb on + strandat 33.650 kb on + strand, within Pf1N1B4_5278at 33.651 kb on - strand, within Pf1N1B4_5278at 33.651 kb on - strandat 33.651 kb on - strand, within Pf1N1B4_5278at 33.765 kb on + strandat 33.838 kb on + strandat 33.953 kb on + strandat 33.969 kb on - strandat 33.993 kb on + strandat 33.994 kb on - strandat 34.022 kb on + strandat 34.085 kb on + strand, within Pf1N1B4_5279at 34.102 kb on + strand, within Pf1N1B4_5279at 34.102 kb on + strand, within Pf1N1B4_5279at 34.102 kb on + strand, within Pf1N1B4_5279at 34.102 kb on + strand, within Pf1N1B4_5279at 34.103 kb on - strand, within Pf1N1B4_5279at 34.103 kb on - strandat 34.213 kb on + strandat 34.213 kb on + strandat 34.214 kb on - strandat 34.214 kb on - strandat 34.214 kb on - strandat 34.267 kb on + strandat 34.267 kb on + strandat 34.268 kb on - strandat 34.268 kb on - strandat 34.268 kb on - strandat 34.605 kb on + strand, within Pf1N1B4_5280at 34.606 kb on - strand, within Pf1N1B4_5280

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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32,521 + -1.9
32,521 + +0.4
32,521 + +1.3
32,860 + Pf1N1B4_5276 0.89 -1.2
32,860 + Pf1N1B4_5276 0.89 -1.1
32,860 + Pf1N1B4_5276 0.89 +2.1
32,943 + -2.9
32,944 - -0.4
33,084 + -1.5
33,084 + Pf1N1B4_5277 0.12 -0.6
33,085 - Pf1N1B4_5277 0.12 +1.4
33,085 - Pf1N1B4_5277 0.12 +1.5
33,188 + Pf1N1B4_5277 0.50 -1.6
33,235 + Pf1N1B4_5277 0.67 -0.9
33,236 - Pf1N1B4_5277 0.67 -1.9
33,236 - Pf1N1B4_5277 0.67 -0.4
33,263 + Pf1N1B4_5277 0.77 -0.3
33,263 + Pf1N1B4_5277 0.77 -0.1
33,264 - Pf1N1B4_5277 0.77 -0.4
33,266 + Pf1N1B4_5277 0.78 -2.2
33,266 + Pf1N1B4_5277 0.78 -0.3
33,267 - Pf1N1B4_5277 0.78 -1.9
33,361 - +0.6
33,361 - +0.9
33,484 - -1.5
33,484 - +2.0
33,627 - Pf1N1B4_5278 0.72 -2.9
33,650 + +0.1
33,650 + +0.8
33,650 + Pf1N1B4_5278 0.84 -1.5
33,651 - Pf1N1B4_5278 0.84 -2.2
33,651 - -0.5
33,651 - Pf1N1B4_5278 0.84 -0.6
33,765 + -0.9
33,838 + -0.9
33,953 + -0.6
33,969 - -0.9
33,993 + -0.9
33,994 - +0.3
34,022 + -1.1
34,085 + Pf1N1B4_5279 0.40 -1.9
34,102 + Pf1N1B4_5279 0.48 -0.9
34,102 + Pf1N1B4_5279 0.48 -0.3
34,102 + Pf1N1B4_5279 0.48 -1.5
34,102 + Pf1N1B4_5279 0.48 +0.2
34,103 - Pf1N1B4_5279 0.48 -2.5
34,103 - +0.1
34,213 + -0.1
34,213 + +1.4
34,214 - +0.1
34,214 - -1.7
34,214 - -2.7
34,267 + +1.4
34,267 + -1.6
34,268 - -0.9
34,268 - -0.9
34,268 - +1.7
34,605 + Pf1N1B4_5280 0.23 +0.5
34,606 - Pf1N1B4_5280 0.23 -0.9

Or see this region's nucleotide sequence