Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5273 and Pf1N1B4_5274 are separated by 176 nucleotides Pf1N1B4_5274 and Pf1N1B4_5275 are separated by 424 nucleotides
Pf1N1B4_5273 - hypothetical protein, at 29,325 to 29,489
_5273
Pf1N1B4_5274 - hypothetical protein, at 29,666 to 29,947
_5274
Pf1N1B4_5275 - hypothetical protein, at 30,372 to 30,725
_5275
Position (kb)
30
31 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 29.594 kb on + strand at 29.594 kb on + strand at 29.595 kb on - strand at 29.595 kb on - strand at 29.595 kb on - strand at 29.595 kb on - strand at 29.595 kb on - strand at 29.656 kb on + strand at 29.656 kb on + strand at 29.708 kb on + strand, within Pf1N1B4_5274 at 29.709 kb on - strand, within Pf1N1B4_5274 at 29.709 kb on - strand, within Pf1N1B4_5274 at 29.780 kb on + strand, within Pf1N1B4_5274 at 29.780 kb on + strand, within Pf1N1B4_5274 at 29.780 kb on + strand, within Pf1N1B4_5274 at 29.780 kb on + strand, within Pf1N1B4_5274 at 29.781 kb on - strand, within Pf1N1B4_5274 at 29.781 kb on - strand, within Pf1N1B4_5274 at 29.872 kb on + strand, within Pf1N1B4_5274 at 29.872 kb on + strand, within Pf1N1B4_5274 at 29.912 kb on + strand, within Pf1N1B4_5274 at 29.912 kb on + strand, within Pf1N1B4_5274 at 29.924 kb on + strand at 29.924 kb on + strand at 29.924 kb on + strand at 29.924 kb on + strand at 29.924 kb on + strand at 29.924 kb on + strand at 29.924 kb on + strand at 29.924 kb on + strand at 29.924 kb on + strand at 29.925 kb on - strand at 29.925 kb on - strand at 29.925 kb on - strand at 29.945 kb on + strand at 29.945 kb on + strand at 29.946 kb on - strand at 29.946 kb on - strand at 29.985 kb on + strand at 29.985 kb on + strand at 29.985 kb on + strand at 30.143 kb on + strand at 30.143 kb on + strand at 30.143 kb on + strand at 30.143 kb on + strand at 30.144 kb on - strand at 30.144 kb on - strand at 30.144 kb on - strand at 30.144 kb on - strand at 30.144 kb on - strand at 30.144 kb on - strand at 30.212 kb on - strand at 30.212 kb on - strand at 30.278 kb on + strand at 30.297 kb on + strand at 30.383 kb on + strand at 30.384 kb on - strand at 30.384 kb on - strand at 30.564 kb on + strand, within Pf1N1B4_5275 at 30.565 kb on - strand, within Pf1N1B4_5275 at 30.565 kb on - strand, within Pf1N1B4_5275 at 30.600 kb on + strand, within Pf1N1B4_5275 at 30.600 kb on + strand at 30.600 kb on + strand, within Pf1N1B4_5275 at 30.723 kb on + strand at 30.724 kb on - strand at 30.780 kb on + strand at 30.805 kb on + strand at 30.904 kb on + strand at 30.919 kb on + strand at 30.919 kb on + strand at 30.945 kb on + strand at 31.092 kb on + strand at 31.095 kb on + strand at 31.095 kb on + strand at 31.095 kb on + strand at 31.095 kb on + strand at 31.096 kb on - strand at 31.096 kb on - strand at 31.096 kb on - strand at 31.174 kb on - strand at 31.263 kb on + strand at 31.264 kb on - strand at 31.301 kb on - strand at 31.360 kb on + strand at 31.361 kb on - strand at 31.459 kb on + strand at 31.459 kb on + strand at 31.459 kb on + strand at 31.459 kb on + strand at 31.460 kb on - strand at 31.475 kb on + strand at 31.567 kb on - strand at 31.637 kb on - strand at 31.663 kb on + strand at 31.663 kb on + strand at 31.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 29,594 + +0.5 29,594 + +2.1 29,595 - -0.3 29,595 - +0.1 29,595 - -1.5 29,595 - -1.5 29,595 - +1.1 29,656 + -0.6 29,656 + +0.4 29,708 + Pf1N1B4_5274 0.15 +0.4 29,709 - Pf1N1B4_5274 0.15 +0.1 29,709 - Pf1N1B4_5274 0.15 -1.3 29,780 + Pf1N1B4_5274 0.40 -1.9 29,780 + Pf1N1B4_5274 0.40 -1.9 29,780 + Pf1N1B4_5274 0.40 -1.1 29,780 + Pf1N1B4_5274 0.40 +1.4 29,781 - Pf1N1B4_5274 0.41 +0.1 29,781 - Pf1N1B4_5274 0.41 +3.1 29,872 + Pf1N1B4_5274 0.73 -0.9 29,872 + Pf1N1B4_5274 0.73 +0.9 29,912 + Pf1N1B4_5274 0.87 -0.9 29,912 + Pf1N1B4_5274 0.87 -2.7 29,924 + -1.0 29,924 + +1.4 29,924 + -1.5 29,924 + +1.7 29,924 + -0.9 29,924 + +1.7 29,924 + -0.9 29,924 + -0.6 29,924 + +1.3 29,925 - -0.9 29,925 - -1.5 29,925 - -0.2 29,945 + -0.6 29,945 + -0.9 29,946 - +0.1 29,946 - -0.2 29,985 + +0.8 29,985 + +0.3 29,985 + +2.1 30,143 + -2.2 30,143 + -2.5 30,143 + +1.1 30,143 + -0.5 30,144 - +1.9 30,144 - -0.9 30,144 - -0.4 30,144 - -2.2 30,144 - +0.3 30,144 - +0.1 30,212 - -3.2 30,212 - -0.5 30,278 + -1.9 30,297 + +1.1 30,383 + -0.9 30,384 - +0.8 30,384 - -0.2 30,564 + Pf1N1B4_5275 0.54 +2.4 30,565 - Pf1N1B4_5275 0.55 +0.8 30,565 - Pf1N1B4_5275 0.55 +0.9 30,600 + Pf1N1B4_5275 0.64 -1.9 30,600 + -1.5 30,600 + Pf1N1B4_5275 0.64 +1.3 30,723 + +3.9 30,724 - +1.1 30,780 + +0.3 30,805 + -0.1 30,904 + -0.2 30,919 + +0.8 30,919 + +0.1 30,945 + +0.1 31,092 + +0.4 31,095 + +0.1 31,095 + +1.1 31,095 + -1.2 31,095 + -1.5 31,096 - -0.3 31,096 - -1.5 31,096 - +0.1 31,174 - +1.5 31,263 + +0.1 31,264 - +1.1 31,301 - -0.4 31,360 + +1.7 31,361 - +0.8 31,459 + -2.2 31,459 + +0.3 31,459 + +0.7 31,459 + -0.2 31,460 - -0.9 31,475 + -0.9 31,567 - -1.2 31,637 - -0.9 31,663 + +0.7 31,663 + +0.1 31,663 + -1.6
Or see this region's nucleotide sequence