Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_525 and Pf1N1B4_526 are separated by 9 nucleotides Pf1N1B4_526 and Pf1N1B4_527 are separated by 51 nucleotides
Pf1N1B4_525 - Agmatinase (EC 3.5.3.11), at 624,569 to 625,519
_525
Pf1N1B4_526 - Undecaprenyl pyrophosphate synthase, at 625,529 to 625,951
_526
Pf1N1B4_527 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 626,003 to 627,514
_527
Position (kb) 625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 624.538 kb on + strand at 624.538 kb on + strand at 624.538 kb on + strand at 624.538 kb on + strand at 624.539 kb on - strand at 624.539 kb on - strand at 624.542 kb on + strand at 624.542 kb on + strand at 624.543 kb on - strand at 624.779 kb on + strand, within Pf1N1B4_525 at 624.780 kb on - strand, within Pf1N1B4_525 at 624.780 kb on - strand, within Pf1N1B4_525 at 624.894 kb on - strand, within Pf1N1B4_525 at 624.979 kb on + strand, within Pf1N1B4_525 at 624.980 kb on - strand, within Pf1N1B4_525 at 625.086 kb on + strand, within Pf1N1B4_525 at 625.087 kb on - strand, within Pf1N1B4_525 at 625.145 kb on + strand, within Pf1N1B4_525 at 625.145 kb on + strand, within Pf1N1B4_525 at 625.146 kb on - strand, within Pf1N1B4_525 at 625.274 kb on + strand, within Pf1N1B4_525 at 625.274 kb on + strand, within Pf1N1B4_525 at 625.434 kb on - strand at 625.479 kb on - strand at 625.604 kb on + strand, within Pf1N1B4_526 at 625.605 kb on - strand, within Pf1N1B4_526 at 625.605 kb on - strand, within Pf1N1B4_526 at 625.643 kb on + strand, within Pf1N1B4_526 at 625.644 kb on - strand at 625.644 kb on - strand, within Pf1N1B4_526 at 625.679 kb on + strand, within Pf1N1B4_526 at 625.679 kb on + strand, within Pf1N1B4_526 at 625.893 kb on + strand, within Pf1N1B4_526 at 625.893 kb on + strand, within Pf1N1B4_526 at 626.009 kb on - strand at 626.032 kb on + strand at 626.033 kb on - strand at 626.456 kb on + strand, within Pf1N1B4_527 at 626.456 kb on + strand, within Pf1N1B4_527 at 626.495 kb on + strand, within Pf1N1B4_527 at 626.495 kb on + strand, within Pf1N1B4_527 at 626.495 kb on + strand, within Pf1N1B4_527 at 626.495 kb on + strand, within Pf1N1B4_527 at 626.495 kb on + strand, within Pf1N1B4_527 at 626.600 kb on + strand, within Pf1N1B4_527 at 626.600 kb on + strand, within Pf1N1B4_527 at 626.600 kb on + strand, within Pf1N1B4_527 at 626.601 kb on - strand, within Pf1N1B4_527 at 626.601 kb on - strand, within Pf1N1B4_527 at 626.717 kb on + strand, within Pf1N1B4_527 at 626.717 kb on + strand, within Pf1N1B4_527 at 626.861 kb on + strand, within Pf1N1B4_527 at 626.861 kb on + strand, within Pf1N1B4_527 at 626.861 kb on + strand, within Pf1N1B4_527 at 626.861 kb on + strand, within Pf1N1B4_527 at 626.861 kb on + strand, within Pf1N1B4_527 at 626.861 kb on + strand, within Pf1N1B4_527 at 626.862 kb on - strand, within Pf1N1B4_527 at 626.862 kb on - strand, within Pf1N1B4_527 at 626.862 kb on - strand, within Pf1N1B4_527 at 626.862 kb on - strand, within Pf1N1B4_527 at 626.862 kb on - strand, within Pf1N1B4_527 at 626.862 kb on - strand, within Pf1N1B4_527 at 626.862 kb on - strand, within Pf1N1B4_527
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 624,538 + +2.3 624,538 + -0.5 624,538 + -0.7 624,538 + +3.2 624,539 - -0.8 624,539 - +0.3 624,542 + -0.2 624,542 + +1.4 624,543 - -0.0 624,779 + Pf1N1B4_525 0.22 -0.6 624,780 - Pf1N1B4_525 0.22 -1.5 624,780 - Pf1N1B4_525 0.22 -3.2 624,894 - Pf1N1B4_525 0.34 +0.4 624,979 + Pf1N1B4_525 0.43 -1.6 624,980 - Pf1N1B4_525 0.43 +1.8 625,086 + Pf1N1B4_525 0.54 -1.8 625,087 - Pf1N1B4_525 0.54 -0.2 625,145 + Pf1N1B4_525 0.61 -0.4 625,145 + Pf1N1B4_525 0.61 +1.0 625,146 - Pf1N1B4_525 0.61 +0.9 625,274 + Pf1N1B4_525 0.74 -0.7 625,274 + Pf1N1B4_525 0.74 -2.0 625,434 - +0.4 625,479 - -0.0 625,604 + Pf1N1B4_526 0.18 +0.8 625,605 - Pf1N1B4_526 0.18 +1.6 625,605 - Pf1N1B4_526 0.18 +0.6 625,643 + Pf1N1B4_526 0.27 +1.7 625,644 - +1.0 625,644 - Pf1N1B4_526 0.27 +0.8 625,679 + Pf1N1B4_526 0.35 +1.6 625,679 + Pf1N1B4_526 0.35 +0.6 625,893 + Pf1N1B4_526 0.86 -2.0 625,893 + Pf1N1B4_526 0.86 -1.0 626,009 - +1.3 626,032 + -0.0 626,033 - -0.3 626,456 + Pf1N1B4_527 0.30 -0.0 626,456 + Pf1N1B4_527 0.30 -0.0 626,495 + Pf1N1B4_527 0.33 -0.4 626,495 + Pf1N1B4_527 0.33 -1.1 626,495 + Pf1N1B4_527 0.33 -0.7 626,495 + Pf1N1B4_527 0.33 +0.5 626,495 + Pf1N1B4_527 0.33 -1.2 626,600 + Pf1N1B4_527 0.39 +1.2 626,600 + Pf1N1B4_527 0.39 +1.0 626,600 + Pf1N1B4_527 0.39 +0.3 626,601 - Pf1N1B4_527 0.40 -0.7 626,601 - Pf1N1B4_527 0.40 -1.6 626,717 + Pf1N1B4_527 0.47 +0.6 626,717 + Pf1N1B4_527 0.47 +0.8 626,861 + Pf1N1B4_527 0.57 -1.0 626,861 + Pf1N1B4_527 0.57 +0.4 626,861 + Pf1N1B4_527 0.57 -0.2 626,861 + Pf1N1B4_527 0.57 +0.6 626,861 + Pf1N1B4_527 0.57 +0.9 626,861 + Pf1N1B4_527 0.57 -0.4 626,862 - Pf1N1B4_527 0.57 -0.0 626,862 - Pf1N1B4_527 0.57 -2.3 626,862 - Pf1N1B4_527 0.57 -0.0 626,862 - Pf1N1B4_527 0.57 -0.0 626,862 - Pf1N1B4_527 0.57 +0.6 626,862 - Pf1N1B4_527 0.57 -0.7 626,862 - Pf1N1B4_527 0.57 -2.2
Or see this region's nucleotide sequence