Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4993

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4992 and Pf1N1B4_4993 are separated by 140 nucleotidesPf1N1B4_4993 and Pf1N1B4_4994 are separated by 168 nucleotides Pf1N1B4_4992 - Dienelactone hydrolase and related enzymes, at 5,538,604 to 5,539,563 _4992 Pf1N1B4_4993 - Arabinose efflux permease, at 5,539,704 to 5,540,849 _4993 Pf1N1B4_4994 - Putrescine/proton symporter, putrescine/ornithine antiporter PotE, at 5,541,018 to 5,542,349 _4994 Position (kb) 5539 5540 5541Strain fitness (log2 ratio) -2 -1 0 1 2at 5538.797 kb on - strand, within Pf1N1B4_4992at 5538.901 kb on + strand, within Pf1N1B4_4992at 5539.033 kb on - strandat 5539.061 kb on - strand, within Pf1N1B4_4992at 5539.061 kb on - strand, within Pf1N1B4_4992at 5539.061 kb on - strandat 5539.061 kb on - strandat 5539.238 kb on - strandat 5539.343 kb on - strand, within Pf1N1B4_4992at 5539.343 kb on - strand, within Pf1N1B4_4992at 5539.436 kb on - strand, within Pf1N1B4_4992at 5539.436 kb on - strand, within Pf1N1B4_4992at 5539.633 kb on - strandat 5539.636 kb on - strandat 5539.679 kb on + strandat 5539.679 kb on + strandat 5539.781 kb on - strandat 5539.914 kb on - strand, within Pf1N1B4_4993at 5539.953 kb on + strand, within Pf1N1B4_4993at 5539.954 kb on - strand, within Pf1N1B4_4993at 5539.996 kb on + strand, within Pf1N1B4_4993at 5540.198 kb on - strand, within Pf1N1B4_4993at 5540.343 kb on + strand, within Pf1N1B4_4993at 5540.950 kb on + strandat 5541.208 kb on - strand, within Pf1N1B4_4994at 5541.208 kb on - strand, within Pf1N1B4_4994at 5541.208 kb on - strand, within Pf1N1B4_4994at 5541.283 kb on - strand, within Pf1N1B4_4994at 5541.288 kb on + strand, within Pf1N1B4_4994at 5541.289 kb on - strand, within Pf1N1B4_4994at 5541.593 kb on + strand, within Pf1N1B4_4994at 5541.596 kb on + strand, within Pf1N1B4_4994at 5541.596 kb on + strand, within Pf1N1B4_4994at 5541.597 kb on - strand, within Pf1N1B4_4994at 5541.612 kb on - strand, within Pf1N1B4_4994at 5541.729 kb on + strand, within Pf1N1B4_4994at 5541.811 kb on - strandat 5541.818 kb on + strand, within Pf1N1B4_4994at 5541.818 kb on + strand, within Pf1N1B4_4994at 5541.818 kb on + strand, within Pf1N1B4_4994at 5541.818 kb on + strand, within Pf1N1B4_4994at 5541.818 kb on + strand, within Pf1N1B4_4994at 5541.818 kb on + strand, within Pf1N1B4_4994at 5541.818 kb on + strand, within Pf1N1B4_4994at 5541.818 kb on + strand, within Pf1N1B4_4994at 5541.818 kb on + strand, within Pf1N1B4_4994at 5541.819 kb on - strand, within Pf1N1B4_4994at 5541.819 kb on - strand, within Pf1N1B4_4994at 5541.819 kb on - strand, within Pf1N1B4_4994at 5541.819 kb on - strand, within Pf1N1B4_4994at 5541.819 kb on - strandat 5541.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,538,797 - Pf1N1B4_4992 0.20 -1.4
5,538,901 + Pf1N1B4_4992 0.31 -1.4
5,539,033 - -2.4
5,539,061 - Pf1N1B4_4992 0.48 +0.2
5,539,061 - Pf1N1B4_4992 0.48 +0.6
5,539,061 - +1.8
5,539,061 - -1.4
5,539,238 - +2.2
5,539,343 - Pf1N1B4_4992 0.77 -0.5
5,539,343 - Pf1N1B4_4992 0.77 -0.4
5,539,436 - Pf1N1B4_4992 0.87 -1.4
5,539,436 - Pf1N1B4_4992 0.87 -1.4
5,539,633 - +0.2
5,539,636 - +1.5
5,539,679 + +0.6
5,539,679 + +1.9
5,539,781 - +0.2
5,539,914 - Pf1N1B4_4993 0.18 -0.4
5,539,953 + Pf1N1B4_4993 0.22 -1.4
5,539,954 - Pf1N1B4_4993 0.22 -1.4
5,539,996 + Pf1N1B4_4993 0.25 -2.0
5,540,198 - Pf1N1B4_4993 0.43 -0.1
5,540,343 + Pf1N1B4_4993 0.56 -1.0
5,540,950 + -0.2
5,541,208 - Pf1N1B4_4994 0.14 +0.6
5,541,208 - Pf1N1B4_4994 0.14 +0.3
5,541,208 - Pf1N1B4_4994 0.14 -0.4
5,541,283 - Pf1N1B4_4994 0.20 -0.7
5,541,288 + Pf1N1B4_4994 0.20 +0.9
5,541,289 - Pf1N1B4_4994 0.20 -0.8
5,541,593 + Pf1N1B4_4994 0.43 +0.0
5,541,596 + Pf1N1B4_4994 0.43 -0.8
5,541,596 + Pf1N1B4_4994 0.43 +0.4
5,541,597 - Pf1N1B4_4994 0.43 -1.7
5,541,612 - Pf1N1B4_4994 0.45 -0.8
5,541,729 + Pf1N1B4_4994 0.53 +1.8
5,541,811 - -1.4
5,541,818 + Pf1N1B4_4994 0.60 +2.3
5,541,818 + Pf1N1B4_4994 0.60 -0.8
5,541,818 + Pf1N1B4_4994 0.60 +0.3
5,541,818 + Pf1N1B4_4994 0.60 -0.4
5,541,818 + Pf1N1B4_4994 0.60 +0.3
5,541,818 + Pf1N1B4_4994 0.60 +0.9
5,541,818 + Pf1N1B4_4994 0.60 -1.0
5,541,818 + Pf1N1B4_4994 0.60 +0.6
5,541,818 + Pf1N1B4_4994 0.60 -2.7
5,541,819 - Pf1N1B4_4994 0.60 -1.4
5,541,819 - Pf1N1B4_4994 0.60 +1.2
5,541,819 - Pf1N1B4_4994 0.60 +0.0
5,541,819 - Pf1N1B4_4994 0.60 -0.4
5,541,819 - +1.2
5,541,819 - -0.4

Or see this region's nucleotide sequence