Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4980 and Pf1N1B4_4981 are separated by 9 nucleotides Pf1N1B4_4981 and Pf1N1B4_4982 are separated by 101 nucleotides Pf1N1B4_4982 and Pf1N1B4_4983 are separated by 178 nucleotides
Pf1N1B4_4980 - putative lipoprotein, at 5,519,754 to 5,520,896
_4980
Pf1N1B4_4981 - lipoprotein, putative, at 5,520,906 to 5,521,544
_4981
Pf1N1B4_4982 - Transcriptional regulator, AraC family, at 5,521,646 to 5,522,650
_4982
Pf1N1B4_4983 - Polyhydroxyalkanoic acid synthase, at 5,522,829 to 5,524,586
_4983
Position (kb)
5521
5522
5523 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5520.819 kb on + strand at 5520.840 kb on + strand at 5520.891 kb on - strand at 5520.991 kb on + strand, within Pf1N1B4_4981 at 5520.991 kb on + strand, within Pf1N1B4_4981 at 5521.018 kb on + strand, within Pf1N1B4_4981 at 5521.019 kb on - strand, within Pf1N1B4_4981 at 5521.081 kb on + strand, within Pf1N1B4_4981 at 5521.082 kb on - strand, within Pf1N1B4_4981 at 5521.130 kb on + strand, within Pf1N1B4_4981 at 5521.139 kb on + strand at 5521.234 kb on + strand, within Pf1N1B4_4981 at 5521.235 kb on - strand at 5521.235 kb on - strand, within Pf1N1B4_4981 at 5521.248 kb on - strand, within Pf1N1B4_4981 at 5521.588 kb on + strand at 5521.588 kb on + strand at 5521.588 kb on + strand at 5521.588 kb on + strand at 5521.589 kb on - strand at 5521.589 kb on - strand at 5521.589 kb on - strand at 5521.634 kb on + strand at 5521.634 kb on + strand at 5521.635 kb on - strand at 5521.635 kb on - strand at 5521.636 kb on + strand at 5521.636 kb on + strand at 5521.636 kb on + strand at 5521.644 kb on + strand at 5521.644 kb on + strand at 5521.648 kb on - strand at 5521.724 kb on - strand at 5521.961 kb on + strand, within Pf1N1B4_4982 at 5521.987 kb on + strand, within Pf1N1B4_4982 at 5521.998 kb on + strand, within Pf1N1B4_4982 at 5522.165 kb on + strand at 5522.166 kb on - strand, within Pf1N1B4_4982 at 5522.166 kb on - strand, within Pf1N1B4_4982 at 5522.614 kb on - strand at 5522.684 kb on - strand at 5522.692 kb on - strand at 5522.835 kb on - strand at 5522.949 kb on - strand at 5523.529 kb on + strand, within Pf1N1B4_4983 at 5523.529 kb on + strand, within Pf1N1B4_4983 at 5523.529 kb on + strand, within Pf1N1B4_4983 at 5523.529 kb on + strand, within Pf1N1B4_4983 at 5523.573 kb on + strand, within Pf1N1B4_4983 at 5523.574 kb on - strand, within Pf1N1B4_4983 at 5523.576 kb on + strand, within Pf1N1B4_4983 at 5523.576 kb on + strand, within Pf1N1B4_4983 at 5523.577 kb on - strand, within Pf1N1B4_4983 at 5523.577 kb on - strand, within Pf1N1B4_4983 at 5523.634 kb on + strand, within Pf1N1B4_4983 at 5523.634 kb on + strand, within Pf1N1B4_4983 at 5523.634 kb on + strand, within Pf1N1B4_4983 at 5523.634 kb on + strand, within Pf1N1B4_4983 at 5523.634 kb on + strand, within Pf1N1B4_4983 at 5523.635 kb on - strand, within Pf1N1B4_4983 at 5523.635 kb on - strand, within Pf1N1B4_4983 at 5523.640 kb on + strand, within Pf1N1B4_4983 at 5523.640 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 5,520,819 + -0.7 5,520,840 + -0.0 5,520,891 - -0.5 5,520,991 + Pf1N1B4_4981 0.13 +0.8 5,520,991 + Pf1N1B4_4981 0.13 -0.2 5,521,018 + Pf1N1B4_4981 0.18 +1.2 5,521,019 - Pf1N1B4_4981 0.18 -1.4 5,521,081 + Pf1N1B4_4981 0.27 -0.5 5,521,082 - Pf1N1B4_4981 0.28 +1.0 5,521,130 + Pf1N1B4_4981 0.35 -1.1 5,521,139 + +0.2 5,521,234 + Pf1N1B4_4981 0.51 -0.0 5,521,235 - -0.4 5,521,235 - Pf1N1B4_4981 0.51 +1.6 5,521,248 - Pf1N1B4_4981 0.54 +0.4 5,521,588 + +0.8 5,521,588 + +1.2 5,521,588 + -0.1 5,521,588 + -0.1 5,521,589 - +1.3 5,521,589 - -1.4 5,521,589 - +1.6 5,521,634 + -0.4 5,521,634 + +0.9 5,521,635 - +0.6 5,521,635 - +2.2 5,521,636 + +0.6 5,521,636 + -0.4 5,521,636 + +0.1 5,521,644 + +1.2 5,521,644 + -2.0 5,521,648 - +2.4 5,521,724 - -0.2 5,521,961 + Pf1N1B4_4982 0.31 +0.0 5,521,987 + Pf1N1B4_4982 0.34 +1.0 5,521,998 + Pf1N1B4_4982 0.35 +0.2 5,522,165 + +1.2 5,522,166 - Pf1N1B4_4982 0.52 +0.3 5,522,166 - Pf1N1B4_4982 0.52 +1.4 5,522,614 - -0.4 5,522,684 - -1.4 5,522,692 - +0.2 5,522,835 - +2.4 5,522,949 - +0.6 5,523,529 + Pf1N1B4_4983 0.40 +0.1 5,523,529 + Pf1N1B4_4983 0.40 -2.7 5,523,529 + Pf1N1B4_4983 0.40 -1.7 5,523,529 + Pf1N1B4_4983 0.40 -0.6 5,523,573 + Pf1N1B4_4983 0.42 +0.6 5,523,574 - Pf1N1B4_4983 0.42 -0.4 5,523,576 + Pf1N1B4_4983 0.42 -0.8 5,523,576 + Pf1N1B4_4983 0.42 +1.0 5,523,577 - Pf1N1B4_4983 0.43 -1.1 5,523,577 - Pf1N1B4_4983 0.43 +0.1 5,523,634 + Pf1N1B4_4983 0.46 -0.0 5,523,634 + Pf1N1B4_4983 0.46 -0.8 5,523,634 + Pf1N1B4_4983 0.46 +1.6 5,523,634 + Pf1N1B4_4983 0.46 +0.2 5,523,634 + Pf1N1B4_4983 0.46 +1.2 5,523,635 - Pf1N1B4_4983 0.46 +0.8 5,523,635 - Pf1N1B4_4983 0.46 -1.4 5,523,640 + Pf1N1B4_4983 0.46 +1.2 5,523,640 + -1.4
Or see this region's nucleotide sequence