Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4728 and Pf1N1B4_4729 are separated by 77 nucleotides Pf1N1B4_4729 and Pf1N1B4_4730 are separated by 282 nucleotides Pf1N1B4_4730 and Pf1N1B4_4731 are separated by 342 nucleotides
Pf1N1B4_4728 - Na+/H+ antiporter NhaB, at 5,224,615 to 5,226,117
_4728
Pf1N1B4_4729 - Hemolysin-type calcium-binding region, at 5,226,195 to 5,227,484
_4729
Pf1N1B4_4730 - FIG00960186: hypothetical protein, at 5,227,767 to 5,228,030
_4730
Pf1N1B4_4731 - Sigma-54 dependent transcriptional regulator, at 5,228,373 to 5,229,698
_4731
Position (kb) 5226
5227
5228 Strain fitness (log2 ratio) -1
0
1
2 at 5225.630 kb on + strand, within Pf1N1B4_4728 at 5225.631 kb on - strand, within Pf1N1B4_4728 at 5225.796 kb on - strand, within Pf1N1B4_4728 at 5225.796 kb on - strand, within Pf1N1B4_4728 at 5225.796 kb on - strand, within Pf1N1B4_4728 at 5225.812 kb on - strand, within Pf1N1B4_4728 at 5225.859 kb on - strand, within Pf1N1B4_4728 at 5226.132 kb on - strand at 5226.135 kb on - strand at 5226.135 kb on - strand at 5226.252 kb on + strand at 5226.496 kb on - strand, within Pf1N1B4_4729 at 5226.496 kb on - strand at 5226.496 kb on - strand, within Pf1N1B4_4729 at 5226.496 kb on - strand, within Pf1N1B4_4729 at 5226.539 kb on + strand, within Pf1N1B4_4729 at 5226.852 kb on - strand at 5226.882 kb on + strand, within Pf1N1B4_4729 at 5227.653 kb on - strand at 5227.704 kb on + strand at 5227.704 kb on + strand at 5227.719 kb on + strand at 5227.719 kb on + strand at 5227.720 kb on - strand at 5227.768 kb on + strand at 5227.799 kb on - strand, within Pf1N1B4_4730 at 5227.930 kb on - strand, within Pf1N1B4_4730 at 5228.045 kb on - strand at 5228.045 kb on - strand at 5228.047 kb on - strand at 5228.047 kb on - strand at 5228.103 kb on - strand at 5228.242 kb on - strand at 5228.248 kb on - strand at 5228.267 kb on - strand at 5228.480 kb on + strand at 5228.480 kb on + strand at 5228.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 5,225,630 + Pf1N1B4_4728 0.68 +0.2 5,225,631 - Pf1N1B4_4728 0.68 -0.4 5,225,796 - Pf1N1B4_4728 0.79 -0.4 5,225,796 - Pf1N1B4_4728 0.79 +0.2 5,225,796 - Pf1N1B4_4728 0.79 +1.6 5,225,812 - Pf1N1B4_4728 0.80 -1.3 5,225,859 - Pf1N1B4_4728 0.83 -0.4 5,226,132 - -0.1 5,226,135 - +0.2 5,226,135 - +1.7 5,226,252 + +1.9 5,226,496 - Pf1N1B4_4729 0.23 +1.6 5,226,496 - +0.9 5,226,496 - Pf1N1B4_4729 0.23 +0.4 5,226,496 - Pf1N1B4_4729 0.23 -0.8 5,226,539 + Pf1N1B4_4729 0.27 -0.4 5,226,852 - +2.1 5,226,882 + Pf1N1B4_4729 0.53 +2.0 5,227,653 - -0.4 5,227,704 + -0.1 5,227,704 + -0.1 5,227,719 + +1.4 5,227,719 + -0.9 5,227,720 - -0.4 5,227,768 + -0.4 5,227,799 - Pf1N1B4_4730 0.12 +1.2 5,227,930 - Pf1N1B4_4730 0.62 -0.4 5,228,045 - +0.1 5,228,045 - -0.4 5,228,047 - -1.4 5,228,047 - -0.4 5,228,103 - +1.6 5,228,242 - +0.3 5,228,248 - +0.6 5,228,267 - +2.4 5,228,480 + -0.4 5,228,480 + -1.0 5,228,481 - +0.2
Or see this region's nucleotide sequence