Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4667 and Pf1N1B4_4668 overlap by 4 nucleotides Pf1N1B4_4668 and Pf1N1B4_4669 overlap by 10 nucleotides Pf1N1B4_4669 and Pf1N1B4_4670 are separated by 258 nucleotides
Pf1N1B4_4667 - Acriflavin resistance plasma membrane protein, at 5,146,584 to 5,148,125
_4667
Pf1N1B4_4668 - Heavy metal RND efflux outer membrane protein, CzcC family, at 5,148,122 to 5,148,688
_4668
Pf1N1B4_4669 - Heavy metal RND efflux outer membrane protein, CzcC family, at 5,148,679 to 5,149,602
_4669
Pf1N1B4_4670 - Sensory box/GGDEF family protein, at 5,149,861 to 5,151,942
_4670
Position (kb) 5148
5149
5150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5147.715 kb on + strand, within Pf1N1B4_4667 at 5147.716 kb on - strand, within Pf1N1B4_4667 at 5147.716 kb on - strand, within Pf1N1B4_4667 at 5148.025 kb on - strand at 5148.239 kb on + strand, within Pf1N1B4_4668 at 5148.272 kb on + strand, within Pf1N1B4_4668 at 5148.273 kb on - strand, within Pf1N1B4_4668 at 5148.273 kb on - strand, within Pf1N1B4_4668 at 5148.273 kb on - strand, within Pf1N1B4_4668 at 5148.345 kb on - strand, within Pf1N1B4_4668 at 5148.570 kb on - strand, within Pf1N1B4_4668 at 5148.715 kb on + strand at 5148.716 kb on - strand at 5148.716 kb on - strand at 5148.929 kb on + strand, within Pf1N1B4_4669 at 5149.105 kb on + strand, within Pf1N1B4_4669 at 5149.143 kb on + strand, within Pf1N1B4_4669 at 5149.287 kb on + strand at 5149.334 kb on - strand, within Pf1N1B4_4669 at 5149.334 kb on - strand, within Pf1N1B4_4669 at 5149.876 kb on + strand at 5149.876 kb on + strand at 5149.876 kb on + strand at 5149.884 kb on + strand at 5149.917 kb on - strand at 5149.927 kb on + strand at 5149.927 kb on + strand at 5149.927 kb on + strand at 5149.928 kb on - strand at 5149.929 kb on + strand at 5149.930 kb on - strand at 5149.930 kb on - strand at 5149.930 kb on - strand at 5150.227 kb on + strand, within Pf1N1B4_4670 at 5150.227 kb on + strand at 5150.227 kb on + strand at 5150.228 kb on - strand, within Pf1N1B4_4670 at 5150.228 kb on - strand, within Pf1N1B4_4670 at 5150.429 kb on - strand, within Pf1N1B4_4670 at 5150.429 kb on - strand, within Pf1N1B4_4670
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 5,147,715 + Pf1N1B4_4667 0.73 -1.2 5,147,716 - Pf1N1B4_4667 0.73 -1.0 5,147,716 - Pf1N1B4_4667 0.73 -2.2 5,148,025 - -1.4 5,148,239 + Pf1N1B4_4668 0.21 -0.4 5,148,272 + Pf1N1B4_4668 0.26 +1.2 5,148,273 - Pf1N1B4_4668 0.27 -0.4 5,148,273 - Pf1N1B4_4668 0.27 -1.0 5,148,273 - Pf1N1B4_4668 0.27 -0.4 5,148,345 - Pf1N1B4_4668 0.39 -3.0 5,148,570 - Pf1N1B4_4668 0.79 +0.4 5,148,715 + -0.4 5,148,716 - -1.4 5,148,716 - -0.3 5,148,929 + Pf1N1B4_4669 0.27 +1.2 5,149,105 + Pf1N1B4_4669 0.46 -1.0 5,149,143 + Pf1N1B4_4669 0.50 -2.7 5,149,287 + -0.4 5,149,334 - Pf1N1B4_4669 0.71 -1.6 5,149,334 - Pf1N1B4_4669 0.71 +0.4 5,149,876 + -3.4 5,149,876 + +0.8 5,149,876 + +0.3 5,149,884 + -0.4 5,149,917 - -3.0 5,149,927 + -2.0 5,149,927 + +0.4 5,149,927 + -0.4 5,149,928 - +0.6 5,149,929 + -0.7 5,149,930 - +0.6 5,149,930 - +0.2 5,149,930 - +0.8 5,150,227 + Pf1N1B4_4670 0.18 +1.8 5,150,227 + -0.4 5,150,227 + -1.4 5,150,228 - Pf1N1B4_4670 0.18 -0.4 5,150,228 - Pf1N1B4_4670 0.18 -1.1 5,150,429 - Pf1N1B4_4670 0.27 +0.3 5,150,429 - Pf1N1B4_4670 0.27 +1.1
Or see this region's nucleotide sequence