Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4666 and Pf1N1B4_4667 overlap by 22 nucleotides Pf1N1B4_4667 and Pf1N1B4_4668 overlap by 4 nucleotides Pf1N1B4_4668 and Pf1N1B4_4669 overlap by 10 nucleotides
Pf1N1B4_4666 - Acriflavin resistance plasma membrane protein, at 5,145,019 to 5,146,605
_4666
Pf1N1B4_4667 - Acriflavin resistance plasma membrane protein, at 5,146,584 to 5,148,125
_4667
Pf1N1B4_4668 - Heavy metal RND efflux outer membrane protein, CzcC family, at 5,148,122 to 5,148,688
_4668
Pf1N1B4_4669 - Heavy metal RND efflux outer membrane protein, CzcC family, at 5,148,679 to 5,149,602
_4669
Position (kb) 5146
5147
5148
5149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5145.629 kb on + strand, within Pf1N1B4_4666 at 5145.630 kb on - strand, within Pf1N1B4_4666 at 5145.739 kb on + strand, within Pf1N1B4_4666 at 5145.826 kb on + strand, within Pf1N1B4_4666 at 5146.150 kb on + strand, within Pf1N1B4_4666 at 5146.151 kb on - strand, within Pf1N1B4_4666 at 5146.563 kb on + strand at 5146.563 kb on + strand at 5146.564 kb on - strand at 5146.589 kb on - strand at 5147.010 kb on + strand, within Pf1N1B4_4667 at 5147.016 kb on + strand at 5147.016 kb on + strand at 5147.248 kb on - strand, within Pf1N1B4_4667 at 5147.619 kb on + strand at 5147.620 kb on - strand, within Pf1N1B4_4667 at 5147.620 kb on - strand, within Pf1N1B4_4667 at 5147.715 kb on + strand, within Pf1N1B4_4667 at 5147.716 kb on - strand, within Pf1N1B4_4667 at 5147.716 kb on - strand, within Pf1N1B4_4667 at 5148.025 kb on - strand at 5148.239 kb on + strand, within Pf1N1B4_4668 at 5148.272 kb on + strand, within Pf1N1B4_4668 at 5148.273 kb on - strand, within Pf1N1B4_4668 at 5148.273 kb on - strand, within Pf1N1B4_4668 at 5148.273 kb on - strand, within Pf1N1B4_4668 at 5148.345 kb on - strand, within Pf1N1B4_4668 at 5148.570 kb on - strand, within Pf1N1B4_4668 at 5148.715 kb on + strand at 5148.716 kb on - strand at 5148.716 kb on - strand at 5148.929 kb on + strand, within Pf1N1B4_4669 at 5149.105 kb on + strand, within Pf1N1B4_4669
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 5,145,629 + Pf1N1B4_4666 0.38 +2.4 5,145,630 - Pf1N1B4_4666 0.39 -0.7 5,145,739 + Pf1N1B4_4666 0.45 -1.0 5,145,826 + Pf1N1B4_4666 0.51 +0.1 5,146,150 + Pf1N1B4_4666 0.71 +0.0 5,146,151 - Pf1N1B4_4666 0.71 +0.5 5,146,563 + +0.2 5,146,563 + -1.1 5,146,564 - -0.4 5,146,589 - +1.4 5,147,010 + Pf1N1B4_4667 0.28 +0.9 5,147,016 + -1.4 5,147,016 + +0.6 5,147,248 - Pf1N1B4_4667 0.43 -1.1 5,147,619 + +0.2 5,147,620 - Pf1N1B4_4667 0.67 +0.9 5,147,620 - Pf1N1B4_4667 0.67 -0.4 5,147,715 + Pf1N1B4_4667 0.73 -1.2 5,147,716 - Pf1N1B4_4667 0.73 -1.0 5,147,716 - Pf1N1B4_4667 0.73 -2.2 5,148,025 - -1.4 5,148,239 + Pf1N1B4_4668 0.21 -0.4 5,148,272 + Pf1N1B4_4668 0.26 +1.2 5,148,273 - Pf1N1B4_4668 0.27 -0.4 5,148,273 - Pf1N1B4_4668 0.27 -1.0 5,148,273 - Pf1N1B4_4668 0.27 -0.4 5,148,345 - Pf1N1B4_4668 0.39 -3.0 5,148,570 - Pf1N1B4_4668 0.79 +0.4 5,148,715 + -0.4 5,148,716 - -1.4 5,148,716 - -0.3 5,148,929 + Pf1N1B4_4669 0.27 +1.2 5,149,105 + Pf1N1B4_4669 0.46 -1.0
Or see this region's nucleotide sequence