Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4640

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4638 and Pf1N1B4_4639 overlap by 4 nucleotidesPf1N1B4_4639 and Pf1N1B4_4640 are separated by 5 nucleotidesPf1N1B4_4640 and Pf1N1B4_4641 are separated by 289 nucleotidesPf1N1B4_4641 and Pf1N1B4_4642 are separated by 186 nucleotides Pf1N1B4_4638 - FIG00954674: hypothetical protein, at 5,115,420 to 5,115,914 _4638 Pf1N1B4_4639 - hypothetical protein PA3071, at 5,115,911 to 5,116,855 _4639 Pf1N1B4_4640 - MoxR-like ATPase in aerotolerance operon, at 5,116,861 to 5,117,820 _4640 Pf1N1B4_4641 - FIG00954580: hypothetical protein, at 5,118,110 to 5,118,463 _4641 Pf1N1B4_4642 - hypothetical protein, at 5,118,650 to 5,118,763 _4642 Position (kb) 5116 5117 5118Strain fitness (log2 ratio) -3 -2 -1 0 1at 5115.945 kb on + strandat 5115.946 kb on - strandat 5116.059 kb on + strand, within Pf1N1B4_4639at 5116.125 kb on - strand, within Pf1N1B4_4639at 5116.280 kb on + strand, within Pf1N1B4_4639at 5116.281 kb on - strand, within Pf1N1B4_4639at 5116.960 kb on + strand, within Pf1N1B4_4640at 5116.961 kb on - strand, within Pf1N1B4_4640at 5117.147 kb on + strand, within Pf1N1B4_4640at 5117.147 kb on + strand, within Pf1N1B4_4640at 5117.171 kb on + strand, within Pf1N1B4_4640at 5117.171 kb on + strand, within Pf1N1B4_4640at 5117.171 kb on + strand, within Pf1N1B4_4640at 5117.172 kb on - strand, within Pf1N1B4_4640at 5117.172 kb on - strand, within Pf1N1B4_4640at 5117.358 kb on - strand, within Pf1N1B4_4640at 5117.421 kb on - strandat 5118.126 kb on + strandat 5118.126 kb on + strandat 5118.126 kb on + strandat 5118.126 kb on + strandat 5118.126 kb on + strandat 5118.126 kb on + strandat 5118.126 kb on + strandat 5118.126 kb on + strandat 5118.126 kb on + strandat 5118.126 kb on + strandat 5118.127 kb on - strandat 5118.127 kb on - strandat 5118.130 kb on + strandat 5118.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,115,945 + -2.0
5,115,946 - -1.1
5,116,059 + Pf1N1B4_4639 0.16 +0.6
5,116,125 - Pf1N1B4_4639 0.23 -0.4
5,116,280 + Pf1N1B4_4639 0.39 -1.4
5,116,281 - Pf1N1B4_4639 0.39 -0.1
5,116,960 + Pf1N1B4_4640 0.10 -3.0
5,116,961 - Pf1N1B4_4640 0.10 -2.4
5,117,147 + Pf1N1B4_4640 0.30 +0.6
5,117,147 + Pf1N1B4_4640 0.30 -3.2
5,117,171 + Pf1N1B4_4640 0.32 +1.6
5,117,171 + Pf1N1B4_4640 0.32 -1.7
5,117,171 + Pf1N1B4_4640 0.32 -3.0
5,117,172 - Pf1N1B4_4640 0.32 -1.4
5,117,172 - Pf1N1B4_4640 0.32 -1.4
5,117,358 - Pf1N1B4_4640 0.52 -1.0
5,117,421 - -2.0
5,118,126 + +1.2
5,118,126 + +0.0
5,118,126 + -0.4
5,118,126 + -2.7
5,118,126 + -0.4
5,118,126 + +1.4
5,118,126 + -0.4
5,118,126 + -1.4
5,118,126 + +0.8
5,118,126 + +0.0
5,118,127 - -0.5
5,118,127 - +1.2
5,118,130 + +0.8
5,118,620 + +1.2

Or see this region's nucleotide sequence