Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4599

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4597 and Pf1N1B4_4598 are separated by 92 nucleotidesPf1N1B4_4598 and Pf1N1B4_4599 are separated by 228 nucleotidesPf1N1B4_4599 and Pf1N1B4_4600 are separated by 293 nucleotides Pf1N1B4_4597 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 5,070,341 to 5,071,099 _4597 Pf1N1B4_4598 - Ribonuclease HI (EC 3.1.26.4), at 5,071,192 to 5,071,644 _4598 Pf1N1B4_4599 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 5,071,873 to 5,072,631 _4599 Pf1N1B4_4600 - Lysine decarboxylase, inducible (EC 4.1.1.18), at 5,072,925 to 5,075,180 _4600 Position (kb) 5071 5072 5073Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5070.974 kb on + strand, within Pf1N1B4_4597at 5070.978 kb on + strandat 5071.003 kb on - strandat 5071.097 kb on + strandat 5071.100 kb on + strandat 5071.101 kb on - strandat 5071.109 kb on + strandat 5071.205 kb on + strandat 5071.800 kb on + strandat 5071.801 kb on - strandat 5072.928 kb on + strandat 5072.928 kb on + strandat 5072.928 kb on + strandat 5072.928 kb on + strandat 5072.928 kb on + strandat 5072.929 kb on - strandat 5072.929 kb on - strandat 5072.929 kb on - strandat 5072.929 kb on - strandat 5073.060 kb on + strandat 5073.060 kb on + strandat 5073.112 kb on + strandat 5073.113 kb on - strandat 5073.292 kb on - strand, within Pf1N1B4_4600at 5073.292 kb on - strand, within Pf1N1B4_4600at 5073.415 kb on - strand, within Pf1N1B4_4600

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,070,974 + Pf1N1B4_4597 0.83 -1.4
5,070,978 + -2.0
5,071,003 - +2.0
5,071,097 + +3.0
5,071,100 + -0.4
5,071,101 - -0.7
5,071,109 + -0.1
5,071,205 + -0.4
5,071,800 + +0.6
5,071,801 - +1.0
5,072,928 + +0.0
5,072,928 + +0.3
5,072,928 + -0.6
5,072,928 + -4.0
5,072,928 + +1.6
5,072,929 - -0.7
5,072,929 - +2.0
5,072,929 - -0.4
5,072,929 - -0.4
5,073,060 + +0.6
5,073,060 + -2.4
5,073,112 + +2.4
5,073,113 - -1.4
5,073,292 - Pf1N1B4_4600 0.16 -0.4
5,073,292 - Pf1N1B4_4600 0.16 -0.4
5,073,415 - Pf1N1B4_4600 0.22 -0.4

Or see this region's nucleotide sequence