Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4597 and Pf1N1B4_4598 are separated by 92 nucleotides Pf1N1B4_4598 and Pf1N1B4_4599 are separated by 228 nucleotides Pf1N1B4_4599 and Pf1N1B4_4600 are separated by 293 nucleotides
Pf1N1B4_4597 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 5,070,341 to 5,071,099
_4597
Pf1N1B4_4598 - Ribonuclease HI (EC 3.1.26.4), at 5,071,192 to 5,071,644
_4598
Pf1N1B4_4599 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 5,071,873 to 5,072,631
_4599
Pf1N1B4_4600 - Lysine decarboxylase, inducible (EC 4.1.1.18), at 5,072,925 to 5,075,180
_4600
Position (kb)
5071
5072
5073 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 5070.974 kb on + strand, within Pf1N1B4_4597 at 5070.978 kb on + strand at 5071.003 kb on - strand at 5071.097 kb on + strand at 5071.100 kb on + strand at 5071.101 kb on - strand at 5071.109 kb on + strand at 5071.205 kb on + strand at 5071.800 kb on + strand at 5071.801 kb on - strand at 5072.928 kb on + strand at 5072.928 kb on + strand at 5072.928 kb on + strand at 5072.928 kb on + strand at 5072.928 kb on + strand at 5072.929 kb on - strand at 5072.929 kb on - strand at 5072.929 kb on - strand at 5072.929 kb on - strand at 5073.060 kb on + strand at 5073.060 kb on + strand at 5073.112 kb on + strand at 5073.113 kb on - strand at 5073.292 kb on - strand, within Pf1N1B4_4600 at 5073.292 kb on - strand, within Pf1N1B4_4600 at 5073.415 kb on - strand, within Pf1N1B4_4600
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 5,070,974 + Pf1N1B4_4597 0.83 -1.4 5,070,978 + -2.0 5,071,003 - +2.0 5,071,097 + +3.0 5,071,100 + -0.4 5,071,101 - -0.7 5,071,109 + -0.1 5,071,205 + -0.4 5,071,800 + +0.6 5,071,801 - +1.0 5,072,928 + +0.0 5,072,928 + +0.3 5,072,928 + -0.6 5,072,928 + -4.0 5,072,928 + +1.6 5,072,929 - -0.7 5,072,929 - +2.0 5,072,929 - -0.4 5,072,929 - -0.4 5,073,060 + +0.6 5,073,060 + -2.4 5,073,112 + +2.4 5,073,113 - -1.4 5,073,292 - Pf1N1B4_4600 0.16 -0.4 5,073,292 - Pf1N1B4_4600 0.16 -0.4 5,073,415 - Pf1N1B4_4600 0.22 -0.4
Or see this region's nucleotide sequence