Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4570 and Pf1N1B4_4571 are separated by 151 nucleotides Pf1N1B4_4571 and Pf1N1B4_4572 are separated by 123 nucleotides Pf1N1B4_4572 and Pf1N1B4_4573 overlap by 8 nucleotides
Pf1N1B4_4570 - Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23), at 5,042,654 to 5,043,505
_4570
Pf1N1B4_4571 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 5,043,657 to 5,044,589
_4571
Pf1N1B4_4572 - hypothetical protein, at 5,044,713 to 5,045,039
_4572
Pf1N1B4_4573 - transporter, LysE family, at 5,045,032 to 5,045,739
_4573
Position (kb) 5043
5044
5045 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5042.736 kb on + strand at 5042.952 kb on + strand, within Pf1N1B4_4570 at 5042.953 kb on - strand, within Pf1N1B4_4570 at 5042.953 kb on - strand, within Pf1N1B4_4570 at 5043.004 kb on - strand, within Pf1N1B4_4570 at 5043.066 kb on + strand, within Pf1N1B4_4570 at 5043.067 kb on - strand, within Pf1N1B4_4570 at 5043.067 kb on - strand, within Pf1N1B4_4570 at 5043.338 kb on - strand, within Pf1N1B4_4570 at 5043.760 kb on + strand, within Pf1N1B4_4571 at 5043.760 kb on + strand, within Pf1N1B4_4571 at 5043.760 kb on + strand, within Pf1N1B4_4571 at 5043.765 kb on - strand, within Pf1N1B4_4571 at 5043.765 kb on - strand, within Pf1N1B4_4571 at 5043.875 kb on - strand, within Pf1N1B4_4571 at 5044.639 kb on + strand at 5044.639 kb on + strand at 5044.639 kb on + strand at 5044.640 kb on - strand at 5044.640 kb on - strand at 5044.640 kb on - strand at 5044.640 kb on - strand at 5044.640 kb on - strand at 5044.739 kb on + strand at 5044.740 kb on - strand at 5044.820 kb on + strand, within Pf1N1B4_4572 at 5045.112 kb on + strand at 5045.113 kb on - strand, within Pf1N1B4_4573 at 5045.113 kb on - strand, within Pf1N1B4_4573 at 5045.113 kb on - strand at 5045.292 kb on - strand, within Pf1N1B4_4573 at 5045.292 kb on - strand, within Pf1N1B4_4573 at 5045.537 kb on + strand, within Pf1N1B4_4573 at 5045.537 kb on + strand, within Pf1N1B4_4573 at 5045.538 kb on - strand, within Pf1N1B4_4573 at 5045.538 kb on - strand, within Pf1N1B4_4573 at 5045.539 kb on + strand, within Pf1N1B4_4573 at 5045.540 kb on - strand, within Pf1N1B4_4573 at 5045.574 kb on - strand, within Pf1N1B4_4573 at 5045.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 5,042,736 + -0.1 5,042,952 + Pf1N1B4_4570 0.35 -0.0 5,042,953 - Pf1N1B4_4570 0.35 -0.2 5,042,953 - Pf1N1B4_4570 0.35 +1.5 5,043,004 - Pf1N1B4_4570 0.41 -0.4 5,043,066 + Pf1N1B4_4570 0.48 +0.0 5,043,067 - Pf1N1B4_4570 0.48 -2.0 5,043,067 - Pf1N1B4_4570 0.48 +0.4 5,043,338 - Pf1N1B4_4570 0.80 -0.7 5,043,760 + Pf1N1B4_4571 0.11 -2.8 5,043,760 + Pf1N1B4_4571 0.11 -1.4 5,043,760 + Pf1N1B4_4571 0.11 -0.4 5,043,765 - Pf1N1B4_4571 0.12 -2.5 5,043,765 - Pf1N1B4_4571 0.12 -0.4 5,043,875 - Pf1N1B4_4571 0.23 +0.6 5,044,639 + +2.0 5,044,639 + -0.1 5,044,639 + +0.2 5,044,640 - +0.3 5,044,640 - +0.4 5,044,640 - +1.6 5,044,640 - -0.4 5,044,640 - +1.4 5,044,739 + +0.6 5,044,740 - -1.4 5,044,820 + Pf1N1B4_4572 0.33 +1.2 5,045,112 + -1.4 5,045,113 - Pf1N1B4_4573 0.11 +2.6 5,045,113 - Pf1N1B4_4573 0.11 -0.5 5,045,113 - -2.0 5,045,292 - Pf1N1B4_4573 0.37 +1.0 5,045,292 - Pf1N1B4_4573 0.37 -0.1 5,045,537 + Pf1N1B4_4573 0.71 +0.1 5,045,537 + Pf1N1B4_4573 0.71 +0.2 5,045,538 - Pf1N1B4_4573 0.71 +2.2 5,045,538 - Pf1N1B4_4573 0.71 -0.6 5,045,539 + Pf1N1B4_4573 0.72 -0.5 5,045,540 - Pf1N1B4_4573 0.72 -0.4 5,045,574 - Pf1N1B4_4573 0.77 +0.3 5,045,574 - -0.4
Or see this region's nucleotide sequence