Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4566 and Pf1N1B4_4567 are separated by 161 nucleotides Pf1N1B4_4567 and Pf1N1B4_4568 are separated by 107 nucleotides Pf1N1B4_4568 and Pf1N1B4_4569 are separated by 195 nucleotides Pf1N1B4_4569 and Pf1N1B4_4570 are separated by 35 nucleotides
Pf1N1B4_4566 - Universal stress protein family 7, at 5,039,576 to 5,040,439
_4566
Pf1N1B4_4567 - tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-), at 5,040,601 to 5,041,209
_4567
Pf1N1B4_4568 - FIG00793915: hypothetical protein, at 5,041,317 to 5,041,805
_4568
Pf1N1B4_4569 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 5,042,001 to 5,042,618
_4569
Pf1N1B4_4570 - Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23), at 5,042,654 to 5,043,505
_4570
Position (kb) 5041
5042 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5040.483 kb on + strand at 5040.483 kb on + strand at 5040.483 kb on + strand at 5040.483 kb on + strand at 5040.483 kb on + strand at 5040.483 kb on + strand at 5040.483 kb on + strand at 5040.484 kb on - strand at 5040.484 kb on - strand at 5040.484 kb on - strand at 5040.485 kb on + strand at 5040.485 kb on + strand at 5040.485 kb on + strand at 5040.485 kb on + strand at 5040.486 kb on - strand at 5040.486 kb on - strand at 5040.486 kb on - strand at 5040.486 kb on - strand at 5040.580 kb on + strand at 5040.751 kb on + strand, within Pf1N1B4_4567 at 5040.752 kb on - strand, within Pf1N1B4_4567 at 5041.027 kb on + strand, within Pf1N1B4_4567 at 5041.028 kb on - strand, within Pf1N1B4_4567 at 5041.090 kb on + strand, within Pf1N1B4_4567 at 5041.091 kb on - strand, within Pf1N1B4_4567 at 5041.215 kb on + strand at 5041.216 kb on - strand at 5041.319 kb on - strand at 5041.530 kb on + strand at 5041.618 kb on + strand at 5041.618 kb on + strand at 5041.619 kb on - strand, within Pf1N1B4_4568 at 5041.619 kb on - strand, within Pf1N1B4_4568 at 5041.741 kb on + strand, within Pf1N1B4_4568 at 5041.960 kb on - strand at 5042.026 kb on + strand at 5042.027 kb on - strand at 5042.084 kb on + strand, within Pf1N1B4_4569 at 5042.084 kb on + strand, within Pf1N1B4_4569 at 5042.179 kb on + strand, within Pf1N1B4_4569 at 5042.180 kb on - strand, within Pf1N1B4_4569 at 5042.501 kb on - strand, within Pf1N1B4_4569 at 5042.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 5,040,483 + -0.4 5,040,483 + +1.0 5,040,483 + -0.4 5,040,483 + +1.2 5,040,483 + +0.4 5,040,483 + +0.1 5,040,483 + -3.5 5,040,484 - +1.4 5,040,484 - +0.3 5,040,484 - +1.0 5,040,485 + -1.0 5,040,485 + -1.0 5,040,485 + -1.4 5,040,485 + +3.2 5,040,486 - -0.4 5,040,486 - +1.2 5,040,486 - +0.2 5,040,486 - +1.0 5,040,580 + -1.4 5,040,751 + Pf1N1B4_4567 0.25 +0.0 5,040,752 - Pf1N1B4_4567 0.25 +0.3 5,041,027 + Pf1N1B4_4567 0.70 -1.4 5,041,028 - Pf1N1B4_4567 0.70 +1.6 5,041,090 + Pf1N1B4_4567 0.80 -0.0 5,041,091 - Pf1N1B4_4567 0.80 -0.9 5,041,215 + -1.4 5,041,216 - -0.1 5,041,319 - +0.2 5,041,530 + +0.6 5,041,618 + -1.4 5,041,618 + -0.4 5,041,619 - Pf1N1B4_4568 0.62 -2.0 5,041,619 - Pf1N1B4_4568 0.62 +2.1 5,041,741 + Pf1N1B4_4568 0.87 -2.4 5,041,960 - +0.1 5,042,026 + -3.4 5,042,027 - -1.0 5,042,084 + Pf1N1B4_4569 0.13 +0.2 5,042,084 + Pf1N1B4_4569 0.13 -0.4 5,042,179 + Pf1N1B4_4569 0.29 -0.4 5,042,180 - Pf1N1B4_4569 0.29 -0.9 5,042,501 - Pf1N1B4_4569 0.81 -0.4 5,042,736 + -0.1
Or see this region's nucleotide sequence