Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4505

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4503 and Pf1N1B4_4504 are separated by 3 nucleotidesPf1N1B4_4504 and Pf1N1B4_4505 overlap by 23 nucleotidesPf1N1B4_4505 and Pf1N1B4_4506 are separated by 238 nucleotides Pf1N1B4_4503 - Coenzyme PQQ synthesis protein B, at 4,965,547 to 4,966,461 _4503 Pf1N1B4_4504 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 4,966,465 to 4,966,872 _4504 Pf1N1B4_4505 - Coenzyme PQQ synthesis protein E, at 4,966,850 to 4,968,487 _4505 Pf1N1B4_4506 - Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10), at 4,968,726 to 4,969,889 _4506 Position (kb) 4966 4967 4968 4969Strain fitness (log2 ratio) -2 -1 0 1 2at 4966.359 kb on + strand, within Pf1N1B4_4503at 4966.436 kb on - strandat 4966.449 kb on + strandat 4966.522 kb on + strandat 4966.700 kb on - strand, within Pf1N1B4_4504at 4966.754 kb on - strand, within Pf1N1B4_4504at 4967.118 kb on - strand, within Pf1N1B4_4505at 4967.124 kb on - strand, within Pf1N1B4_4505at 4967.192 kb on + strand, within Pf1N1B4_4505at 4967.435 kb on + strand, within Pf1N1B4_4505at 4967.732 kb on - strand, within Pf1N1B4_4505at 4968.066 kb on - strand, within Pf1N1B4_4505at 4968.695 kb on - strandat 4968.753 kb on - strandat 4968.810 kb on + strandat 4968.930 kb on + strand, within Pf1N1B4_4506at 4968.930 kb on + strand, within Pf1N1B4_4506at 4968.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,966,359 + Pf1N1B4_4503 0.89 +1.0
4,966,436 - -1.9
4,966,449 + +1.3
4,966,522 + -0.3
4,966,700 - Pf1N1B4_4504 0.58 -0.3
4,966,754 - Pf1N1B4_4504 0.71 -1.3
4,967,118 - Pf1N1B4_4505 0.16 -2.7
4,967,124 - Pf1N1B4_4505 0.17 +1.3
4,967,192 + Pf1N1B4_4505 0.21 -1.2
4,967,435 + Pf1N1B4_4505 0.36 -0.7
4,967,732 - Pf1N1B4_4505 0.54 -0.9
4,968,066 - Pf1N1B4_4505 0.74 -1.9
4,968,695 - -2.3
4,968,753 - +2.5
4,968,810 + -0.2
4,968,930 + Pf1N1B4_4506 0.18 +1.1
4,968,930 + Pf1N1B4_4506 0.18 +1.4
4,968,931 - -0.3

Or see this region's nucleotide sequence