Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4472 and Pf1N1B4_4473 overlap by 4 nucleotides Pf1N1B4_4473 and Pf1N1B4_4474 are separated by 105 nucleotides Pf1N1B4_4474 and Pf1N1B4_4475 overlap by 11 nucleotides Pf1N1B4_4475 and Pf1N1B4_4476 are separated by 135 nucleotides
Pf1N1B4_4472 - Transcriptional regulator, ArsR family, at 4,933,656 to 4,934,420
_4472
Pf1N1B4_4473 - Homoserine/homoserine lactone efflux protein, at 4,934,417 to 4,935,025
_4473
Pf1N1B4_4474 - transcription regulator protein, at 4,935,131 to 4,936,057
_4474
Pf1N1B4_4475 - hypothetical protein, at 4,936,047 to 4,936,388
_4475
Pf1N1B4_4476 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 4,936,524 to 4,937,543
_4476
Position (kb)
4935
4936
4937 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4934.541 kb on + strand, within Pf1N1B4_4473 at 4934.541 kb on + strand, within Pf1N1B4_4473 at 4934.542 kb on - strand at 4934.542 kb on - strand at 4934.604 kb on + strand at 4934.605 kb on - strand, within Pf1N1B4_4473 at 4934.770 kb on - strand, within Pf1N1B4_4473 at 4934.802 kb on + strand, within Pf1N1B4_4473 at 4934.803 kb on - strand, within Pf1N1B4_4473 at 4935.002 kb on + strand at 4935.002 kb on + strand at 4935.002 kb on + strand at 4935.098 kb on + strand at 4935.102 kb on + strand at 4935.111 kb on + strand at 4935.155 kb on - strand at 4935.339 kb on - strand, within Pf1N1B4_4474 at 4935.339 kb on - strand, within Pf1N1B4_4474 at 4935.627 kb on + strand, within Pf1N1B4_4474 at 4935.628 kb on - strand at 4935.628 kb on - strand, within Pf1N1B4_4474 at 4935.935 kb on + strand, within Pf1N1B4_4474 at 4936.099 kb on + strand, within Pf1N1B4_4475 at 4936.175 kb on + strand, within Pf1N1B4_4475 at 4936.176 kb on - strand, within Pf1N1B4_4475 at 4936.367 kb on - strand at 4936.432 kb on + strand at 4936.573 kb on - strand at 4936.591 kb on + strand at 4936.654 kb on + strand, within Pf1N1B4_4476 at 4936.655 kb on - strand, within Pf1N1B4_4476 at 4936.655 kb on - strand, within Pf1N1B4_4476 at 4936.692 kb on - strand, within Pf1N1B4_4476 at 4936.918 kb on + strand, within Pf1N1B4_4476 at 4936.919 kb on - strand, within Pf1N1B4_4476 at 4936.978 kb on + strand, within Pf1N1B4_4476 at 4936.978 kb on + strand, within Pf1N1B4_4476 at 4936.979 kb on - strand, within Pf1N1B4_4476 at 4936.979 kb on - strand, within Pf1N1B4_4476 at 4936.979 kb on - strand, within Pf1N1B4_4476
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,934,541 + Pf1N1B4_4473 0.20 -1.3 4,934,541 + Pf1N1B4_4473 0.20 -0.9 4,934,542 - -1.3 4,934,542 - -0.3 4,934,604 + +1.5 4,934,605 - Pf1N1B4_4473 0.31 -1.9 4,934,770 - Pf1N1B4_4473 0.58 -0.7 4,934,802 + Pf1N1B4_4473 0.63 +1.1 4,934,803 - Pf1N1B4_4473 0.63 +1.0 4,935,002 + +1.8 4,935,002 + -0.3 4,935,002 + -2.3 4,935,098 + -1.3 4,935,102 + -1.3 4,935,111 + -1.9 4,935,155 - +0.7 4,935,339 - Pf1N1B4_4474 0.22 +0.7 4,935,339 - Pf1N1B4_4474 0.22 -2.3 4,935,627 + Pf1N1B4_4474 0.54 -1.1 4,935,628 - -0.3 4,935,628 - Pf1N1B4_4474 0.54 -1.5 4,935,935 + Pf1N1B4_4474 0.87 -0.1 4,936,099 + Pf1N1B4_4475 0.15 +0.7 4,936,175 + Pf1N1B4_4475 0.37 -0.7 4,936,176 - Pf1N1B4_4475 0.38 +0.7 4,936,367 - -1.3 4,936,432 + +0.7 4,936,573 - -1.1 4,936,591 + -0.3 4,936,654 + Pf1N1B4_4476 0.13 -2.3 4,936,655 - Pf1N1B4_4476 0.13 -1.9 4,936,655 - Pf1N1B4_4476 0.13 -1.1 4,936,692 - Pf1N1B4_4476 0.16 -1.3 4,936,918 + Pf1N1B4_4476 0.39 +1.1 4,936,919 - Pf1N1B4_4476 0.39 +2.0 4,936,978 + Pf1N1B4_4476 0.45 -2.5 4,936,978 + Pf1N1B4_4476 0.45 +0.3 4,936,979 - Pf1N1B4_4476 0.45 +0.8 4,936,979 - Pf1N1B4_4476 0.45 -0.1 4,936,979 - Pf1N1B4_4476 0.45 +1.4
Or see this region's nucleotide sequence