Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4307

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4306 and Pf1N1B4_4307 are separated by 153 nucleotidesPf1N1B4_4307 and Pf1N1B4_4308 are separated by 13 nucleotidesPf1N1B4_4308 and Pf1N1B4_4309 are separated by 273 nucleotides Pf1N1B4_4306 - Universal stress protein family 5, at 4,768,570 to 4,769,496 _4306 Pf1N1B4_4307 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 4,769,650 to 4,770,039 _4307 Pf1N1B4_4308 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 4,770,053 to 4,770,202 _4308 Pf1N1B4_4309 - Translation elongation factor Tu, at 4,770,476 to 4,771,393 _4309 Position (kb) 4769 4770 4771Strain fitness (log2 ratio) -2 -1 0 1 2at 4768.706 kb on + strand, within Pf1N1B4_4306at 4768.707 kb on - strand, within Pf1N1B4_4306at 4768.707 kb on - strand, within Pf1N1B4_4306at 4768.707 kb on - strand, within Pf1N1B4_4306at 4768.707 kb on - strand, within Pf1N1B4_4306at 4768.707 kb on - strand, within Pf1N1B4_4306at 4768.707 kb on - strand, within Pf1N1B4_4306at 4768.707 kb on - strand, within Pf1N1B4_4306at 4768.711 kb on - strand, within Pf1N1B4_4306at 4768.907 kb on + strand, within Pf1N1B4_4306at 4768.907 kb on + strandat 4768.908 kb on - strand, within Pf1N1B4_4306at 4768.913 kb on + strandat 4768.913 kb on + strand, within Pf1N1B4_4306at 4768.991 kb on + strand, within Pf1N1B4_4306at 4769.307 kb on - strand, within Pf1N1B4_4306at 4769.388 kb on + strand, within Pf1N1B4_4306at 4769.556 kb on - strandat 4769.560 kb on - strandat 4769.763 kb on + strand, within Pf1N1B4_4307at 4769.763 kb on + strand, within Pf1N1B4_4307at 4769.763 kb on + strand, within Pf1N1B4_4307at 4769.764 kb on - strand, within Pf1N1B4_4307at 4769.764 kb on - strand, within Pf1N1B4_4307at 4769.764 kb on - strand, within Pf1N1B4_4307at 4769.800 kb on + strand, within Pf1N1B4_4307at 4769.931 kb on + strand, within Pf1N1B4_4307at 4769.932 kb on - strand, within Pf1N1B4_4307at 4769.951 kb on + strand, within Pf1N1B4_4307at 4769.952 kb on - strand, within Pf1N1B4_4307at 4769.952 kb on - strand, within Pf1N1B4_4307at 4770.370 kb on - strandat 4770.436 kb on - strandat 4770.478 kb on - strandat 4770.729 kb on + strand, within Pf1N1B4_4309at 4770.755 kb on + strand, within Pf1N1B4_4309at 4770.799 kb on - strandat 4770.799 kb on - strand, within Pf1N1B4_4309at 4770.799 kb on - strand, within Pf1N1B4_4309

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,768,706 + Pf1N1B4_4306 0.15 +1.7
4,768,707 - Pf1N1B4_4306 0.15 +0.6
4,768,707 - Pf1N1B4_4306 0.15 +0.1
4,768,707 - Pf1N1B4_4306 0.15 -0.3
4,768,707 - Pf1N1B4_4306 0.15 -0.1
4,768,707 - Pf1N1B4_4306 0.15 +0.7
4,768,707 - Pf1N1B4_4306 0.15 -1.6
4,768,707 - Pf1N1B4_4306 0.15 -1.0
4,768,711 - Pf1N1B4_4306 0.15 -0.3
4,768,907 + Pf1N1B4_4306 0.36 -0.5
4,768,907 + +1.3
4,768,908 - Pf1N1B4_4306 0.36 -1.1
4,768,913 + -1.3
4,768,913 + Pf1N1B4_4306 0.37 -0.5
4,768,991 + Pf1N1B4_4306 0.45 +1.0
4,769,307 - Pf1N1B4_4306 0.80 -0.7
4,769,388 + Pf1N1B4_4306 0.88 +0.1
4,769,556 - +0.5
4,769,560 - +0.0
4,769,763 + Pf1N1B4_4307 0.29 +0.3
4,769,763 + Pf1N1B4_4307 0.29 +0.7
4,769,763 + Pf1N1B4_4307 0.29 -1.9
4,769,764 - Pf1N1B4_4307 0.29 -0.7
4,769,764 - Pf1N1B4_4307 0.29 +1.3
4,769,764 - Pf1N1B4_4307 0.29 -1.3
4,769,800 + Pf1N1B4_4307 0.38 -0.7
4,769,931 + Pf1N1B4_4307 0.72 +0.7
4,769,932 - Pf1N1B4_4307 0.72 -0.7
4,769,951 + Pf1N1B4_4307 0.77 -0.3
4,769,952 - Pf1N1B4_4307 0.77 -2.3
4,769,952 - Pf1N1B4_4307 0.77 -0.7
4,770,370 - +2.3
4,770,436 - +1.0
4,770,478 - -0.6
4,770,729 + Pf1N1B4_4309 0.28 +2.3
4,770,755 + Pf1N1B4_4309 0.30 -0.3
4,770,799 - -2.3
4,770,799 - Pf1N1B4_4309 0.35 -0.5
4,770,799 - Pf1N1B4_4309 0.35 -1.3

Or see this region's nucleotide sequence