Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4290 and Pf1N1B4_4291 are separated by 7 nucleotides Pf1N1B4_4291 and Pf1N1B4_4292 are separated by 150 nucleotides Pf1N1B4_4292 and Pf1N1B4_4293 are separated by 157 nucleotides Pf1N1B4_4293 and Pf1N1B4_4294 are separated by 431 nucleotides Pf1N1B4_4294 and Pf1N1B4_4295 overlap by 1 nucleotides
Pf1N1B4_4290 - FIG00965827: hypothetical protein, at 4,756,626 to 4,756,829
_4290
Pf1N1B4_4291 - FIG00955717: hypothetical protein, at 4,756,837 to 4,757,076
_4291
Pf1N1B4_4292 - FIG00961088: hypothetical protein, at 4,757,227 to 4,757,457
_4292
Pf1N1B4_4293 - hypothetical protein, at 4,757,615 to 4,757,863
_4293
Pf1N1B4_4294 - FIG00954439: hypothetical protein, at 4,758,295 to 4,758,744
_4294
Pf1N1B4_4295 - FIG00954434: hypothetical protein, at 4,758,744 to 4,758,947
_4295
Position (kb)
4757
4758 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4756.635 kb on - strand at 4757.094 kb on + strand at 4757.095 kb on - strand at 4757.208 kb on + strand at 4757.209 kb on - strand at 4757.209 kb on - strand at 4757.209 kb on - strand at 4757.209 kb on - strand at 4757.209 kb on - strand at 4757.209 kb on - strand at 4757.209 kb on - strand at 4757.209 kb on - strand at 4757.444 kb on + strand at 4757.480 kb on - strand at 4757.480 kb on - strand at 4757.480 kb on - strand at 4757.542 kb on + strand at 4757.543 kb on - strand at 4757.543 kb on - strand at 4757.543 kb on - strand at 4757.543 kb on - strand at 4757.543 kb on - strand at 4757.543 kb on - strand at 4757.566 kb on - strand at 4757.566 kb on - strand at 4757.566 kb on - strand at 4757.566 kb on - strand at 4757.593 kb on - strand at 4757.593 kb on - strand at 4757.593 kb on - strand at 4757.634 kb on - strand at 4757.660 kb on - strand, within Pf1N1B4_4293 at 4757.681 kb on + strand, within Pf1N1B4_4293 at 4757.682 kb on - strand, within Pf1N1B4_4293 at 4757.696 kb on + strand at 4757.697 kb on - strand, within Pf1N1B4_4293 at 4757.863 kb on + strand at 4757.864 kb on - strand at 4757.864 kb on - strand at 4757.864 kb on - strand at 4757.897 kb on + strand at 4757.973 kb on - strand at 4758.281 kb on + strand at 4758.285 kb on + strand at 4758.286 kb on - strand at 4758.339 kb on + strand at 4758.394 kb on + strand, within Pf1N1B4_4294 at 4758.394 kb on + strand, within Pf1N1B4_4294 at 4758.394 kb on + strand, within Pf1N1B4_4294 at 4758.394 kb on + strand, within Pf1N1B4_4294 at 4758.395 kb on - strand, within Pf1N1B4_4294 at 4758.615 kb on + strand, within Pf1N1B4_4294 at 4758.743 kb on - strand at 4758.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,756,635 - -0.3 4,757,094 + +1.0 4,757,095 - +0.0 4,757,208 + +1.3 4,757,209 - +2.1 4,757,209 - +1.7 4,757,209 - +0.7 4,757,209 - -1.3 4,757,209 - +1.2 4,757,209 - +0.3 4,757,209 - -0.3 4,757,209 - -1.1 4,757,444 + -0.1 4,757,480 - +0.4 4,757,480 - -1.1 4,757,480 - -0.3 4,757,542 + +0.7 4,757,543 - +1.2 4,757,543 - +1.3 4,757,543 - +1.6 4,757,543 - +1.2 4,757,543 - -0.3 4,757,543 - -0.3 4,757,566 - +0.8 4,757,566 - +1.1 4,757,566 - +2.9 4,757,566 - +0.6 4,757,593 - +1.4 4,757,593 - +0.3 4,757,593 - +0.3 4,757,634 - +1.0 4,757,660 - Pf1N1B4_4293 0.18 +1.4 4,757,681 + Pf1N1B4_4293 0.27 +0.4 4,757,682 - Pf1N1B4_4293 0.27 -0.3 4,757,696 + -1.3 4,757,697 - Pf1N1B4_4293 0.33 +0.5 4,757,863 + -1.3 4,757,864 - +1.0 4,757,864 - +1.3 4,757,864 - -1.9 4,757,897 + -1.1 4,757,973 - +0.3 4,758,281 + +0.4 4,758,285 + +0.5 4,758,286 - +3.2 4,758,339 + -1.1 4,758,394 + Pf1N1B4_4294 0.22 +0.7 4,758,394 + Pf1N1B4_4294 0.22 +1.4 4,758,394 + Pf1N1B4_4294 0.22 +1.7 4,758,394 + Pf1N1B4_4294 0.22 +0.9 4,758,395 - Pf1N1B4_4294 0.22 +1.4 4,758,615 + Pf1N1B4_4294 0.71 -0.3 4,758,743 - +1.0 4,758,743 - -0.3
Or see this region's nucleotide sequence