Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4234 and Pf1N1B4_4235 are separated by 83 nucleotides Pf1N1B4_4235 and Pf1N1B4_4236 are separated by 29 nucleotides
Pf1N1B4_4234 - putative transport protein, at 4,692,537 to 4,693,898
_4234
Pf1N1B4_4235 - Quinone oxidoreductase (EC 1.6.5.5), at 4,693,982 to 4,694,956
_4235
Pf1N1B4_4236 - Transcriptional regulator, LysR family, at 4,694,986 to 4,695,915
_4236
Position (kb) 4693
4694
4695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4693.033 kb on - strand, within Pf1N1B4_4234 at 4693.122 kb on + strand, within Pf1N1B4_4234 at 4693.247 kb on + strand, within Pf1N1B4_4234 at 4693.248 kb on - strand, within Pf1N1B4_4234 at 4693.348 kb on - strand, within Pf1N1B4_4234 at 4693.587 kb on + strand, within Pf1N1B4_4234 at 4693.587 kb on + strand, within Pf1N1B4_4234 at 4693.587 kb on + strand, within Pf1N1B4_4234 at 4693.588 kb on - strand at 4693.594 kb on + strand, within Pf1N1B4_4234 at 4693.990 kb on + strand at 4694.238 kb on - strand, within Pf1N1B4_4235 at 4694.366 kb on + strand, within Pf1N1B4_4235 at 4694.366 kb on + strand, within Pf1N1B4_4235 at 4694.417 kb on + strand, within Pf1N1B4_4235 at 4694.618 kb on + strand, within Pf1N1B4_4235 at 4694.827 kb on - strand, within Pf1N1B4_4235 at 4694.965 kb on - strand at 4695.433 kb on - strand, within Pf1N1B4_4236 at 4695.511 kb on + strand, within Pf1N1B4_4236 at 4695.511 kb on + strand, within Pf1N1B4_4236 at 4695.511 kb on + strand, within Pf1N1B4_4236 at 4695.512 kb on - strand, within Pf1N1B4_4236 at 4695.512 kb on - strand, within Pf1N1B4_4236 at 4695.515 kb on + strand, within Pf1N1B4_4236 at 4695.515 kb on + strand, within Pf1N1B4_4236 at 4695.515 kb on + strand at 4695.515 kb on + strand, within Pf1N1B4_4236 at 4695.515 kb on + strand, within Pf1N1B4_4236 at 4695.515 kb on + strand, within Pf1N1B4_4236 at 4695.516 kb on - strand, within Pf1N1B4_4236 at 4695.516 kb on - strand, within Pf1N1B4_4236 at 4695.516 kb on - strand, within Pf1N1B4_4236 at 4695.516 kb on - strand, within Pf1N1B4_4236 at 4695.516 kb on - strand, within Pf1N1B4_4236 at 4695.516 kb on - strand, within Pf1N1B4_4236 at 4695.516 kb on - strand, within Pf1N1B4_4236 at 4695.516 kb on - strand, within Pf1N1B4_4236 at 4695.516 kb on - strand, within Pf1N1B4_4236 at 4695.561 kb on + strand, within Pf1N1B4_4236 at 4695.561 kb on + strand, within Pf1N1B4_4236 at 4695.561 kb on + strand, within Pf1N1B4_4236 at 4695.561 kb on + strand, within Pf1N1B4_4236 at 4695.562 kb on - strand, within Pf1N1B4_4236 at 4695.562 kb on - strand, within Pf1N1B4_4236 at 4695.805 kb on + strand, within Pf1N1B4_4236 at 4695.806 kb on - strand, within Pf1N1B4_4236 at 4695.806 kb on - strand, within Pf1N1B4_4236
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,693,033 - Pf1N1B4_4234 0.36 +1.5 4,693,122 + Pf1N1B4_4234 0.43 -2.6 4,693,247 + Pf1N1B4_4234 0.52 -0.5 4,693,248 - Pf1N1B4_4234 0.52 +0.1 4,693,348 - Pf1N1B4_4234 0.60 -1.0 4,693,587 + Pf1N1B4_4234 0.77 +0.3 4,693,587 + Pf1N1B4_4234 0.77 -0.2 4,693,587 + Pf1N1B4_4234 0.77 -1.3 4,693,588 - +1.9 4,693,594 + Pf1N1B4_4234 0.78 -1.3 4,693,990 + -1.6 4,694,238 - Pf1N1B4_4235 0.26 -0.3 4,694,366 + Pf1N1B4_4235 0.39 -0.6 4,694,366 + Pf1N1B4_4235 0.39 -1.8 4,694,417 + Pf1N1B4_4235 0.45 -2.3 4,694,618 + Pf1N1B4_4235 0.65 +0.7 4,694,827 - Pf1N1B4_4235 0.87 -1.3 4,694,965 - -0.6 4,695,433 - Pf1N1B4_4236 0.48 +0.3 4,695,511 + Pf1N1B4_4236 0.56 +0.9 4,695,511 + Pf1N1B4_4236 0.56 +0.3 4,695,511 + Pf1N1B4_4236 0.56 -0.3 4,695,512 - Pf1N1B4_4236 0.57 -0.5 4,695,512 - Pf1N1B4_4236 0.57 -0.9 4,695,515 + Pf1N1B4_4236 0.57 -0.5 4,695,515 + Pf1N1B4_4236 0.57 -0.3 4,695,515 + +0.1 4,695,515 + Pf1N1B4_4236 0.57 -0.0 4,695,515 + Pf1N1B4_4236 0.57 -0.5 4,695,515 + Pf1N1B4_4236 0.57 +1.6 4,695,516 - Pf1N1B4_4236 0.57 +1.9 4,695,516 - Pf1N1B4_4236 0.57 -1.6 4,695,516 - Pf1N1B4_4236 0.57 -1.0 4,695,516 - Pf1N1B4_4236 0.57 +0.1 4,695,516 - Pf1N1B4_4236 0.57 -2.9 4,695,516 - Pf1N1B4_4236 0.57 -2.3 4,695,516 - Pf1N1B4_4236 0.57 -2.3 4,695,516 - Pf1N1B4_4236 0.57 -1.3 4,695,516 - Pf1N1B4_4236 0.57 -1.3 4,695,561 + Pf1N1B4_4236 0.62 -0.3 4,695,561 + Pf1N1B4_4236 0.62 +0.1 4,695,561 + Pf1N1B4_4236 0.62 -0.1 4,695,561 + Pf1N1B4_4236 0.62 +0.1 4,695,562 - Pf1N1B4_4236 0.62 +0.1 4,695,562 - Pf1N1B4_4236 0.62 +0.3 4,695,805 + Pf1N1B4_4236 0.88 -0.3 4,695,806 - Pf1N1B4_4236 0.88 +0.5 4,695,806 - Pf1N1B4_4236 0.88 -2.6
Or see this region's nucleotide sequence