Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3965

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3964 and Pf1N1B4_3965 are separated by 231 nucleotidesPf1N1B4_3965 and Pf1N1B4_3966 are separated by 131 nucleotides Pf1N1B4_3964 - VgrG protein, at 4,404,012 to 4,405,436 _3964 Pf1N1B4_3965 - FIG033889: YebC paralog in Betaproteobacteria, at 4,405,668 to 4,406,372 _3965 Pf1N1B4_3966 - serine/threonine protein kinase, at 4,406,504 to 4,407,805 _3966 Position (kb) 4405 4406 4407Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4404.907 kb on - strand, within Pf1N1B4_3964at 4404.907 kb on - strand, within Pf1N1B4_3964at 4404.938 kb on - strandat 4404.994 kb on + strand, within Pf1N1B4_3964at 4404.994 kb on + strand, within Pf1N1B4_3964at 4404.995 kb on - strand, within Pf1N1B4_3964at 4405.178 kb on - strand, within Pf1N1B4_3964at 4405.632 kb on + strandat 4405.632 kb on + strandat 4405.632 kb on + strandat 4405.632 kb on + strandat 4405.632 kb on + strandat 4405.632 kb on + strandat 4405.632 kb on + strandat 4405.633 kb on - strandat 4405.633 kb on - strandat 4405.914 kb on + strand, within Pf1N1B4_3965at 4405.914 kb on + strand, within Pf1N1B4_3965at 4405.914 kb on + strandat 4406.348 kb on + strandat 4406.349 kb on - strandat 4406.370 kb on + strandat 4406.787 kb on + strand, within Pf1N1B4_3966at 4406.787 kb on + strand, within Pf1N1B4_3966at 4407.102 kb on + strand, within Pf1N1B4_3966at 4407.267 kb on + strand, within Pf1N1B4_3966at 4407.268 kb on - strand, within Pf1N1B4_3966at 4407.268 kb on - strand, within Pf1N1B4_3966

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,404,907 - Pf1N1B4_3964 0.63 -1.5
4,404,907 - Pf1N1B4_3964 0.63 -0.8
4,404,938 - -0.2
4,404,994 + Pf1N1B4_3964 0.69 -0.2
4,404,994 + Pf1N1B4_3964 0.69 -1.8
4,404,995 - Pf1N1B4_3964 0.69 -0.5
4,405,178 - Pf1N1B4_3964 0.82 -0.2
4,405,632 + -0.2
4,405,632 + +1.1
4,405,632 + +1.2
4,405,632 + -0.4
4,405,632 + -0.8
4,405,632 + -0.1
4,405,632 + -0.7
4,405,633 - -0.2
4,405,633 - -1.2
4,405,914 + Pf1N1B4_3965 0.35 -2.9
4,405,914 + Pf1N1B4_3965 0.35 -2.2
4,405,914 + +0.8
4,406,348 + -1.2
4,406,349 - -1.5
4,406,370 + +1.1
4,406,787 + Pf1N1B4_3966 0.22 -1.8
4,406,787 + Pf1N1B4_3966 0.22 -0.1
4,407,102 + Pf1N1B4_3966 0.46 -1.8
4,407,267 + Pf1N1B4_3966 0.59 +1.1
4,407,268 - Pf1N1B4_3966 0.59 +2.1
4,407,268 - Pf1N1B4_3966 0.59 +0.4

Or see this region's nucleotide sequence